Geotrypetes seraphini (Gaboon caecilian): 117355048
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Entry
117355048 CDS
T09159
Symbol
EXOSC4
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117355048 (EXOSC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117355048 (EXOSC4)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117355048 (EXOSC4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
117355048 (EXOSC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117355048
NCBI-ProteinID:
XP_033788899
UniProt:
A0A6P8PYB7
LinkDB
All DBs
Position
2:11173968..11184788
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AA seq
245 aa
AA seq
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MAGLELLSDQGYRLDGRKAVELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRG
SRSKALHDRAVVNCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQ
IDIYVQILQADGGNYCACVNAATLAIMDAGIPMRDYVCACSTGFIEDTPLVDLSYIEEAA
GGPQLALALLPKSEQIALLEMNSRLHEDHLEKVLDAASKACRDVYAVLDRVVRDHVQEVC
TLLGE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcgggactcgagctcttgtcggaccagggctaccggctggacggcaggaaagcggtg
gagctgcgcaagatccgggcccgcatgggggtgttcgcgcaggccgacggctcggcctac
atcgagcagggcaacaccaaagccttggcggtcgtgtacgggccgcacgagattcggggc
tcacgcagtaaagctttgcatgaccgggccgtggtgaactgccagtatagcatggctacc
ttcagcacaggtgagaggaaacgccgcccacacggagaccgcaagtccagcgagatgacc
ctgcacctgaagcagacctttgaagcagccattctcacccaactgtatcctcgctctcag
attgacatctatgtacagatcctccaggcagacggtgggaactactgcgcatgtgtgaac
gctgccacgctggccatcatggatgccggcatccccatgagggactacgtgtgcgcctgt
tctacaggcttcatcgaggacacacctctagtagacctgagctatatagaagaggcggcg
gggggccctcagcttgccctggccctgctgcccaagtctgagcagatagcgttgctggag
atgaactcgcgcctccatgaggaccatctggagaaagtcttggatgctgccagcaaggcc
tgccgggacgtgtatgccgtgctggaccgggtggtaagggaccacgtgcaggaggtgtgc
acgctgttgggagagtga
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integrated database retrieval system
