Geotrypetes seraphini (Gaboon caecilian): 117355110
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Entry
117355110 CDS
T09159
Name
(RefSeq) pre-mRNA-processing factor 6-like
KO
K12855
pre-mRNA-processing factor 6
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117355110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117355110
Spliceosome [BR:
gsh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117355110
Complex C
U5 SnRNP specific factors
117355110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_16
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_1
T7SS_EccA1_N
ARM_TT21_C
TPR_21
Motif
Other DBs
NCBI-GeneID:
117355110
NCBI-ProteinID:
XP_033789058
UniProt:
A0A6P8QNK0
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All DBs
Position
2:6008003..6013340
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AA seq
965 aa
AA seq
DB search
MASSVSAPSGNPPGASGLTASITGTMNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIG
PARDANDPVDDRHAPPGKRTVGDQMKKSQADDDDEDLNDTNYDEFNGYAGSLFSSGPYEK
DDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEQE
WLSIPEVGDARNKRQRNPRYDKLTPIPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPFPG
GLNTPYPGGMTPGLMTPGTGDLDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTD
LNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGT
EMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRVYIRAAELETDIRAKKRVLRKA
LEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKA
RENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKA
ASVVTCQAIIRAVIGIGIEEEDRKHTWMEDADSCVSHNALECARAIYAHALQVFPSKKSV
WLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQ
ANPNSEEIWLAAVKLESENNEYERARRLLAKARSSASTARVFMKSVKLEWVLGNIKAAQD
LCEEALNHYEDFPKLWMMKGQILEQEGLSEMAREAYNQGLKKCLHSIPLWLLLSRLEEKI
GQLTRARAILEKSRLKNPKNPELWLESVRLEYRAGLKNIANTLMAKALQECPSSGILWSE
AIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGD
AWAFFYKFELQHGTEEQQEEVRKRCENTEPRHGELWCQVSKDIQNWQDKIGEILLLAASK
IKNAF
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctagcgtttccgcgccgagcggcaacccgcccggagcttcgggcctcaccgcc
tccatcaccggcaccatgaacaagaagaagaagcctttcctcggcatgcccgctccgctg
ggctacgtgccgggcctaggcaggggcgccaccggctttaccacccgctcggatatcggg
cctgcccgggacgccaacgacccggtggacgaccgccacgcgccgccggggaagaggacg
gtgggggaccagatgaagaagagccaggctgacgacgacgacgaggatctgaacgacacc
aactacgacgagttcaacggctacgccggcagcctcttctccagcggcccctacgagaag
gacgacgaggaggccgatgccatctacgcggccctggacaaacggatggacgagaggcgg
aaggagaggcgggagcagcgcgagaaagaagagatcgagaaataccgcatggagaggccc
aaaatccagcagcagttctccgacttgaagaggaaactggcggaagttacagagcaggag
tggctgagtatcccggaagttggcgatgccaggaacaagcgacaaaggaacccacgttat
gacaaactgacccctatcccggacagcttctttgccaaacacttgcagagtggggagaat
cacacctcggtggatccccgacagacgcaatttgggggactgaatactccctttccgggg
gggctgaacacaccttatccaggaggaatgacacctgggctgatgactccgggcactggc
gacctggacatgaggaagataggacaagccaggaataccctgatggatatgagactgagt
caggtgtcggactctgtgagtggccagactgtggtggaccccaaaggatacctgactgac
ttaaattcaatgatcccaacacatggtggagacataaatgatatcaagaaagccaggctg
ctcctgaagtcagtgcgggagaccaaccctcatcaccctccagcttggattgcttctgca
cgtttggaggaggtcactggcaaactacaagtggctcgaaatctcatcatgaaaggcact
gaaatgtgccccaagagtgaagacgtttggttagaagctgcccgcctgcagcctggtgac
acagctaaagctgtggtagctcaagcagtacgtcacttgccacagtctgtgcgggtttat
atccgcgcagcagaattggaaactgatattcgagcaaaaaaacgtgtgctgaggaaagcc
ctggagcatgttcctaattctgtgcgtctatggaaggcagcagtagaactggaagagcct
gaagatgcccgaatcatgctgagtagagccgtagagtgctgtcccacaagtgtagagctg
tggcttgctttagcaagactggaaacatatgaaaatgctcggaaagttctcaacaaagct
cgagaaaatattcctacagaccggcatatctggattacagctgccaaacttgaagaagcc
aatggaaatacacagatggttgaaaagatcattgacagagccattacatccttgcgggca
aatggagtggaaatcaacagggagcagtggattcaggatgcagaggagtgtgataaagct
gccagtgtggtgacatgtcaggcaattattcgagctgtgattggcattgggattgaggag
gaggacaggaaacacacctggatggaagatgctgacagttgtgtttcccacaatgccctg
gagtgtgcccgtgcaatctatgcccacgctttacaggttttcccgagcaagaagagtgtc
tggctcagagcggcatactttgagaagaaccacggcaccagggaatccctggaggcgctc
ttgcagagggctgttgctcattgtcccaaggcagaagtcctgtggttgatgggtgcaaag
tcgaaatggctggcaggagatgtgcctgctgccaggagtattctggccctggctttccag
gcaaatcctaacagtgaagagatctggctggctgcagtgaagctggaatctgagaacaat
gagtatgagagagctagaagattactagcaaaggctcggagcagtgcgtccactgctagg
gtcttcatgaagtcagtaaagttggaatgggtgctaggaaacatcaaagctgcccaagac
ctctgtgaagaagcccttaatcattatgaggattttcccaagctctggatgatgaaaggg
cagattctagaacaggaagggctttcagaaatggctcgtgaagcatataaccaggggcta
aagaagtgtcttcactccattccactgtggctgctgctgtccaggttggaggagaaaatt
ggacagctgacccgtgccagggctatcttggaaaagtctcgtctgaagaatccaaagaac
ccggagctttggttagagtcggtacgcttggagtacagggcagggttgaaaaacattgcc
aacacactgatggccaaagccttgcaagagtgtcccagttcaggaatattgtggtcagaa
gccattttcctggaggcaaggccacaacgtaagacaaagagcgtggatgccctgaagaaa
tgtgagcatgaccctcacgtgctcctggctgtagccaagttattctggagtgagcgtaaa
ataacaaaggcccgggagtggtttcatcgcacagtgaaaattgactcggatctgggtgat
gcctgggctttcttctataagtttgagctgcagcatggcacagaggagcaacaggaggag
gtgcgcaagcgctgtgagaacacagaaccacgccatggcgaactgtggtgccaagtatcc
aaggatatccagaactggcaggacaagattggagaaattctcctacttgcggcttccaag
attaaaaatgccttctaa
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