Geotrypetes seraphini (Gaboon caecilian): 117356326
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Entry
117356326 CDS
T09159
Symbol
PRDM1
Name
(RefSeq) PR domain zinc finger protein 1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117356326 (PRDM1)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117356326 (PRDM1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
zf-C2H2_FBX41
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
117356326
NCBI-ProteinID:
XP_033791283
UniProt:
A0A6P8QUK8
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Position
3:complement(13155873..13201817)
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AA seq
841 aa
AA seq
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MCQTETPGREDRSLPRAGAREPRPMLDFFPLEYPPGSPSAATARSSGPASPTIAPGGGTM
RMAMDDADLTLWAEADFEERCTYVVKDHAWEGGAERGALTQAEASLPRNLSFKYAPDCKE
VIGVLSNEYIPKGTRFGPLVGEIYTLDTVPKNANRKYFWRIYSNGEFDHFIDGFDEERSN
WMRYVNPARSAQEQNLAACQNGSNIYFYTVQPIPAKQELLVWYCRDFAERLHCPSTGELP
LINRTQSCIINPKQDLPHAKSVPKREHSVREILKPSTHQSKAKEMALINISPATPEKDPE
DPRKTCSPFFPRVIYPIRPHVPEDYLKAAVVYGMERPSYVTPSPIQSVTTPSPSARSSPE
QSFKSSSPHSSPEGALSPLHISQDQRDSYPYRNGPYGTEGLRSYPGYAPPNSHLPPALIT
SYTPHYSKFLLPPYSVGCNGLSALNNFNNMSNFGVLPRMYPLYSNLLNGGSLSHHMLNQA
SLPGALVPEGAHRLLQPEQPRDLLIPAPTSAFSSIAGSAASMKNKLSSPNSGSPAAGTAA
TSEHIMQPKATSAVLTSSSEEAMNLIKSKRSMTGYKTLPYPLKKQNGKIKYECNVCSKTF
GQLSNLKVHLRVHSGERPFKCETCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTS
NLKTHLRLHSGEKPYQCKLCPAKFTQFVHLKLHKRLHTRERPHKCIHCHKSYIHLCSLKV
HLKGNCPVAPTSGLSTEDLNRINEEIEKFDISDSADRLEDVEDNIDTSAVVEKEIHAVLR
REMEGVGLKVSLQRNMGPGLLSSGCSFYNPLDSAVLKLPHGHPLPLLPTKVKQETVESMN
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgtgccagacagagacaccggggcgagaggatcgctcgcttccccgggctggtgcgagg
gagccgcgtccaatgttagactttttccctctggaataccctccgggttctccctcggct
gccacagcacggagctccggcccggcgagccccaccatcgccccgggaggggggaccatg
cggatggctatggacgacgcggacctgaccctgtgggccgaggcggacttcgaggagcga
tgcacgtacgtcgtgaaggaccacgcgtgggaaggcggcgctgagcggggcgccctcacc
caggcagaagcgtccctgccccgcaacctgagctttaaatacgcgcccgactgcaaggag
gtgattggtgttctgagcaacgaatacatccccaaagggacacggtttggacccttagta
ggcgagatctacacgctagacacagttcctaagaatgcaaacagaaagtacttttggcgg
atctattccaatggggagtttgaccatttcatcgatggtttcgatgaggagaggagtaac
tggatgcgttatgtgaacccagcacgctcagcgcaagaacaaaatttggccgcctgccag
aatggctcaaatatctacttctacaccgtccagcctattccagccaagcaagagctgctc
gtctggtactgccgggatttcgctgagagactccactgtccctctaccggggagttgccc
ctcataaatcgaacacagagctgcattattaatccaaagcaagacctgccccacgcaaaa
agcgttccaaagagagagcacagtgtgagggagattctgaaaccttccacccatcagtcc
aaagcgaaggagatggccctgatcaatatatcgccggccacaccagagaaagacccggag
gacccgaggaaaacctgcagtccgttctttcctcgggttatctaccctatccgccctcac
gttccggaagactatttgaaggctgctgtagtctatggaatggaaagacccagttacgtt
actccctcgcccatccagtcggtcacaacgcccagtccttcggcaagaagcagtccagag
caaagctttaaaagttcaagtcctcacagcagcccagaaggcgccctgtctcctctacac
atttctcaggaccagagggattcctatccataccggaatggaccatatggcacggaaggg
ttaaggtcgtaccctggatatgcgccccctaacagccacctccctccggcattgataaca
tcctacaccccccactattccaaattcctgctacctccgtacagcgtgggctgtaatggc
ttgagtgctttgaacaattttaataacatgagtaattttggcgtcctaccacggatgtac
cctttgtattccaacctgctgaatggcgggagcctttcccaccacatgctgaaccaggct
tcccttccaggcgcgctggtccccgagggagcacacagactgctgcagccagagcagccc
cgagaccttctcatcccagcgcccaccagtgcgttctcctctatcgcgggttcggcagcc
agcatgaaaaacaagctaagcagccctaatagtgggtctcccgctgccggcacagcggcc
acctcagaacatataatgcaaccgaaagctacctcagcggtgttgaccagcagcagcgaa
gaagccatgaatctcattaaaagcaagagaagcatgactggatataaaacgcttccatat
ccactgaagaagcagaatggaaagattaagtatgaatgcaacgtttgctccaagaccttt
ggccagctctccaatttaaaggtccatctaagagtgcacagtggagagcgacctttcaag
tgtgagacctgcaacaaaggattcactcagttggcccatctgcagaaacattatctcgta
cacacgggagagaagccccacgaatgccaggtttgccataaacgatttagcagcaccagc
aatctaaagacccacctgcgactacattctggagaaaagccataccagtgcaaactctgc
cctgcaaaattcacccaatttgtgcatctcaaactccacaagcgcctccatacccgggag
cgcccacacaaatgtatccactgccacaagagctacattcacctttgcagccttaaggtc
cacctcaagggcaattgtccggtagctccaacctctggtctgtctacagaagacctgaac
cgtatcaatgaggaaattgagaagtttgacatcagtgacagtgcagataggctggaggat
gtagaggacaatattgacacttcggcagttgtggaaaaagaaatccatgccgttctcaga
agagagatggaaggagtcggtctcaaagtatcattgcagagaaacatggggcctgggctt
ctgtcctcgggatgtagcttttataaccctttggactcggcggttttgaagttgcctcac
ggtcatcctttacctcttttgcccacaaaggtcaagcaagaaacagtggaatcaatgaac
ctttaa
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