Geotrypetes seraphini (Gaboon caecilian): 117356503
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Entry
117356503 CDS
T09159
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117356503 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117356503 (PRPF40B)
Spliceosome [BR:
gsh03041
]
Complex A
U1 snRNP components
U1 related factors
117356503 (PRPF40B)
Complex B
117356503 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
Glyco_hyd_101C
WW_2
Motif
Other DBs
NCBI-GeneID:
117356503
NCBI-ProteinID:
XP_033791668
UniProt:
A0A6P8QVM5
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All DBs
Position
3:complement(222611988..222915387)
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AA seq
916 aa
AA seq
DB search
MSAPDSGGGPSGQPASFPNAPPMLPPHFMPPPGMPPPFPPMGMPPMGQRPPAIPPMPPGM
MPPMMPPMAGPPPLSQQMPGMVPPMLPGMMMMPSVQSAPISATGSASGTESISQRFTCKP
IFSKVSCVLSCGTALTQPSPTISNPVVTSMQQNVIGSNSPAKDPPKKKALWTEHKAPDGR
IYYYNSDTKQSTWEKPDELKSKAELLLSQCPWKEYKSDTGKSYYYNSQTKESRWTKPKDL
EELDALIKQEEEAGKQHDTPLVASSPILSPAITADPDITLNEEGELVSSQPTMVTPTDIV
DTAVPQEDVVVQQEEITSSSDAGKKEEEEEEEEEKMEPIKKSYNWSTKEEAKQAFKQLLK
DKGVPSNISWEQAMKMIINDLRYSALPKLSEKKQAFNAYKTQREKEEKEETRLKAKEAKE
KLQRYLEQHEKMTSTTRYRKAEQMFGEVEVWSVVPERDRKEIYDDVLFFLAKKEKEQAKQ
LRKRNIQALKNILDNMSNVSFQTTWSEAQQYLMDNPTFAEDEDLQNMDKEDALICFEEHI
RVLEKEEEEEKEKTRVREKRQERKNREAFQAFLDELHETGQLHSMSTWMELYPSVSTDTR
FANMLGQPGSTPLDLFKFYVEDLKARFHDEKKIVKDILKDRSFSVEVNTTFEDFAHIISF
DKRAATLDAGNIKLTFNSLLEKAEAREHEREKEEERQLRRKEAAFKSMLKLAAPPLEPDC
SWEDVREQFVGDHAFDQITVESERIRLFKEFLQNECQHHHSKSKKHSKKSKKHHRKRSRS
HSGSESEDDEHHHRPQKRKKRNHSETGSDLSSSLDSDHSSRKTKKQKKKSKKKRQKSNSP
ESDVEREKEKSRKENEKESNREREKEKDADRSDSHRKSPKRISKEKTGWDTSESELSEGE
LEKRRRTLLQQLGDDQ
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaccggactctggaggtggcccatctgggcaaccagcttcctttcccaatgct
cctccaatgctaccacctcattttatgccaccccctggaatgcctcctccattcccccca
atgggaatgcctccaatgggtcagagaccaccagcaatcccccctatgcccccaggtatg
atgcctccaatgatgccacccatggcaggaccaccacctttaagccagcaaatgccaggc
atggtgcccccaatgcttcctgggatgatgatgatgcccagtgtgcaatcggcgcctatt
tctgccaccggaagtgcatctgggacagaatccatcagtcaacgttttacttgtaagccc
atcttttcaaaggtcagctgtgttctctcttgtggaactgccctgacacaaccgtctcct
acaatttctaatccggtcgtgacctccatgcagcagaatgttatagggagcaattcccca
gcaaaagaccctccaaagaagaaggctttgtggactgaacacaaggccccagatggtcgt
atttactattacaattctgacactaagcagtccacctgggaaaaaccagatgagctaaaa
tcaaaagctgagctgcttctttctcagtgcccctggaaggaatacaaatctgacacagga
aaatcttactactacaactcccagaccaaggagtcacgctggacaaagcccaaagatttg
gaggaattggatgcattaatcaagcaggaggaggaagcaggaaagcaacatgacacacca
ttggtagcctccagccccattctttcccctgcaatcacagcagaccctgatataaccctt
aatgaggagggagagctggtgtcctcgcagcccacgatggtaacacccacagacatagta
gatactgcagttcctcaggaggatgtggtggtgcagcaggaggaaataaccagcagtagt
gatgcagggaagaaggaggaggaagaagaagaagaggaggagaaaatggaacctataaag
aaatcatacaattggagcacaaaagaggaggcaaagcaggcctttaagcagctgctgaaa
gacaagggtgttccttccaatatatcttgggaacaggcaatgaagatgattattaatgat
ctgcgatacagtgcccttcctaaactcagtgagaagaaacaggccttcaatgcatacaag
acacagagagaaaaagaagagaaagaggaaacccgactaaaagccaaggaggctaaagaa
aaacttcagcgttaccttgaacagcatgagaagatgacatccactactcgctacagaaaa
gctgagcagatgtttggagaagttgaagtttggtctgttgttccagagcgtgaccgaaag
gagatttatgatgatgttctcttcttcttggcaaagaaggagaaggagcaggccaaacaa
ctgcgaaaacgcaatattcaggctctaaagaatatactggacaacatgagcaatgtcagt
ttccagaccacatggtcagaagcccagcagtatcttatggacaaccccacttttgctgaa
gatgaggacctgcagaatatggataaagaagatgcccttatctgctttgaagaacatatt
cgtgtccttgagaaggaggaagaggaggagaaggaaaaaacaagagttcgagaaaaacgt
caagagcgcaaaaatagagaggcattccaggctttcctcgacgagcttcatgagacgggg
cagctgcattctatgtccacctggatggagctgtatccttctgtcagcaccgacactcga
ttcgctaatatgcttgggcagccgggctccacgccccttgacttgtttaaattttatgtg
gaggatttgaaggcacgtttccatgatgaaaagaagattgttaaagatattttaaaggat
cgcagcttcagtgtggaggtgaacacaacctttgaggacttcgcacacattatcagcttt
gacaagagagcagccaccctggatgcaggaaacattaagctgacttttaacagtttgctg
gagaaggcagaggcccgagaacatgagcgagagaaggaggaagagcgtcaactgcggaga
aaggaagctgcatttaagagcatgctgaagctagcagccccacctctagaaccagactgc
agctgggaggacgtaagggaacagtttgttggtgaccatgcctttgatcagatcaccgtg
gagtcagagaggattcgtctttttaaagaatttctccagaatgaatgtcagcatcatcac
tccaagagcaagaagcattcaaaaaaatctaaaaagcaccaccgcaagagatcacgctcc
cattcgggttcagagtcagaggatgatgagcatcatcacagaccacagaaaaggaaaaaa
cggaatcattcggagactggatctgatctctcctcttctctagattcagatcacagctcc
aggaaaaccaaaaaacagaaaaagaaaagcaagaaaaagagacagaaatcgaacagccct
gaaagtgatgtggagcgagaaaaggagaaaagcaggaaagagaatgaaaaagagagtaat
cgagaaagggaaaaggagaaagatgctgatcgttccgactcacatcgcaaatctcccaaa
cgaatctcaaaggagaaaacaggctgggacacgtctgagagtgaacttagtgaaggagag
ttagagaagagacgtaggacattactgcagcagctgggtgatgaccagtaa
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