Geotrypetes seraphini (Gaboon caecilian): 117356526
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Entry
117356526 CDS
T09159
Symbol
NFKB1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04010
MAPK signaling pathway
gsh04210
Apoptosis
gsh04218
Cellular senescence
gsh04620
Toll-like receptor signaling pathway
gsh04621
NOD-like receptor signaling pathway
gsh04622
RIG-I-like receptor signaling pathway
gsh04623
Cytosolic DNA-sensing pathway
gsh04625
C-type lectin receptor signaling pathway
gsh04920
Adipocytokine signaling pathway
gsh05132
Salmonella infection
gsh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117356526 (NFKB1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117356526 (NFKB1)
04218 Cellular senescence
117356526 (NFKB1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117356526 (NFKB1)
04621 NOD-like receptor signaling pathway
117356526 (NFKB1)
04622 RIG-I-like receptor signaling pathway
117356526 (NFKB1)
04623 Cytosolic DNA-sensing pathway
117356526 (NFKB1)
04625 C-type lectin receptor signaling pathway
117356526 (NFKB1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
117356526 (NFKB1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117356526 (NFKB1)
09171 Infectious disease: bacterial
05132 Salmonella infection
117356526 (NFKB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117356526 (NFKB1)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
117356526 (NFKB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
117356526
NCBI-ProteinID:
XP_033791760
UniProt:
A0A6P8Q8A1
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All DBs
Position
1:complement(320306840..320523691)
Genome browser
AA seq
905 aa
AA seq
DB search
MAEDIVYLQGIHDQIFSTESFSMGMSTLFSASDPSLRTDGPYIQITEQPKQRGFRFRYVC
EGPSHGGLPGASSEKNKKSYPQIKIHNFVGHAKVIVQLVTSSKEVRLHAHSLVGKHCEDG
ICTVPAGPKDMIVGFPNLGILHVTKKKVFETLNSRMTEAFRKGYNAGLLVHRDLDYIPGE
HSGERQLTEREKEIIRQIAIQQTKDMDLSVVRLMFTAFLPDSNGSFTRKLEPVISDPIYD
SKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGFWEGFGDFS
PTDVHRQFAIVFKTPKYRDVNILKPANVFVQLRRKSDLETSEPKPFLYYPEIKDKEEVLR
KRQKLMPSFSDYSGGGGAGGGGGGGMFGSGGGSGVGSGGGYGFSSYGYPNYGGIHFHSGT
MNTNPGMKHDFLEAASELAKRHANALFDYAVTGDVKMLLAVQRHLTAAQDDNGDNVLHLA
IIHLHTTLVRNLLDVISGLISDDVANMRNDLYQTPLHLAVITRQADIVECLLAAGADVAL
LDCHGNSALHLAAKAGDEKVLSTLLSHEKTSRIISLPNGDGLSALHLAVMANSMNCLRLM
ITKGADINAQEQKSGRTALHLAVEQENVSLAGCLLLEGDARVDSTTFDGTTPLHIAAGRG
SMKLTALLKAAGANPHVENCEPLYDLEDLQDEDSEDEGIVPGTTPLDMAASDEVYDILNG
KPYESRVTFDDALIQGDMSSLNENAKLKLYKLLDTPDPSKNWSTLAQNLGLGILNNAFRL
SPLPSKTLLDNYEVSGGTVKELLDALTLMNYIEAIEIIQETLCTENKTSTERNVDQPSGP
PNIREQSDEVYNLKDNDSMCDSGVETSFQRLSISSSESLNSRSPFKPPMPALQEVRQKHS
EEGKV
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagacattgtatatttgcagggaattcatgatcaaatattctcaacagagtca
tttagtatgggaatgagcacgctgttttcggcatctgacccatctctacggactgatggg
ccgtacattcaaatcacagagcagccaaagcagcggggctttcgtttccggtatgtgtgc
gaaggaccatcccatggtggacttcctggtgcttcaagtgaaaagaataagaagtcttat
ccacagattaagattcataattttgtaggccacgctaaagtcattgtgcagctagtcacc
agttcgaaagaggtacgcctgcatgctcacagtctagtggggaaacactgtgaagatgga
atatgcacagtcccagcaggaccaaaagatatgattgtggggtttcccaaccttggaata
cttcatgttacaaagaaaaaggtgtttgaaaccttgaattcccgcatgacagaagccttc
agaaaaggttataatgccggactcctggtgcatcgagaccttgattacatacctggagaa
catagtggagaaagacaactaacagagcgagaaaaggaaataattcgccagatagcgatt
cagcagacaaaagacatggacctcagtgtggtgcggctcatgttcaccgccttcctccct
gacagcaacggcagctttacaagaaaattggaacctgttatatccgaccccatctatgac
agcaaagcccccaatgcctcaaacttgaagattgtgagaatggacaggacagcaggatgt
gtgacgggaggagaggagatctatctcctgtgtgacaaggttcagaaagatgatattcag
atccgcttttatgaagaggatgaaaatggtggattctgggaaggatttggagatttttcc
cctacagatgtgcacaggcagtttgctatagtgtttaaaacccccaaatacagagatgtc
aatatcctaaagccagcaaatgtgtttgttcaactccgacgaaaatctgatttagaaact
agtgaaccaaagcccttcctctactacccagaaatcaaagacaaagaagaagtgctgcgg
aagcgacagaagctaatgcccagtttttctgactacagtggtggcggtggtgcaggagga
ggaggaggagggggaatgtttggcagcggaggagggagtggtgtgggctctggaggtgga
tatggtttctcttcctatggttaccctaattatggagggatccatttccattcaggcaca
atgaacaccaatcctggaatgaaacatgattttttggaggcagccagtgagcttgctaag
cgccatgccaatgctctctttgactatgccgtcactggagatgtgaagatgctccttgct
gttcaacgccacctcacagcagcccaggatgataatggtgacaatgtcttgcacctagcc
atcatccacctacacaccaccttagtgaggaacctcttagatgtgatatcaggtttgata
tcagatgatgtggccaatatgagaaatgacctttatcagacacctttgcacttggcagtc
attacgcgtcaggccgacatagtggagtgtctgctggctgctggagctgatgtggccctt
ctagattgccatggcaactcagccttgcaccttgctgcgaaagccggagatgaaaaggtg
ttaagcacacttcttagccatgagaagacatcgaggataataagcctaccaaatggagac
ggattaagtgcccttcatctggcagtgatggcaaacagtatgaactgccttaggctgatg
atcacaaaaggagctgacatcaatgctcaggagcaaaaatcagggagaaccgccttgcat
ttagctgttgaacaagagaatgtgtcactggctggctgcctcttgctcgagggtgatgcc
cgtgttgatagtactacatttgatggaactactccacttcacatagcagcgggaagagga
tcaatgaaactgacagccctactcaaagcagcaggagcaaatcctcacgttgaaaactgt
gagcctctctatgacctagaggatcttcaagatgaggacagtgaagatgaaggcatagtg
cccggaacaacccccctggacatggcagctagtgatgaggtatatgacatattaaatggc
aagccctatgaatctagagttacatttgatgatgcattgatacaaggggatatgagcagc
ctgaacgagaatgcaaaactgaaactgtacaagttgcttgacactcctgatcccagcaag
aactggtccaccctggcacagaacctgggactaggaatactgaacaatgccttccgactg
agccccttgccatccaaaactctgttagacaactatgaggtttctggtggtacagtaaaa
gaacttctggatgccttgacactgatgaactatatagaagcaattgaaattattcaggaa
accttatgcactgaaaacaagaccagcactgagagaaatgtggatcagccatccggtcct
cctaacattagagagcaatcagatgaagtttacaatctcaaggacaatgacagcatgtgt
gacagcggtgtagaaacatcctttcagagactcagcatctcttcctccgagtctttaaac
agccgctctcctttcaaaccccccatgccagctctccaagaggtcagacagaaacactca
gaggaaggcaaagtttaa
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