Geotrypetes seraphini (Gaboon caecilian): 117356540
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Entry
117356540 CDS
T09159
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117356540 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117356540 (HBS1L)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117356540 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
AAA_22
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
117356540
NCBI-ProteinID:
XP_033791772
UniProt:
A0A6P8PU70
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All DBs
Position
3:complement(172284125..172568907)
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AA seq
678 aa
AA seq
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MARHRNVRGYNYDEDFDDDDLYGQSVEDDYCISPATAAQFIYSKREKPTTFAEPLEEEFG
DEEEPGDCDTSDPSLSGPDQARLYSCLDHMREVLGDSVAEQEMIQAVLSSKFDVSQALDL
VLTRNDKQNMKTASSGKSAKGKARDVQCAQPDSDTVQKVAKMTVSGRKQTMGFDVPCAVP
EENDHTTGMARKAPPAEEMSGMVEMAFKVAAASQAVQPSEEVSAAAVPLKSSSKAKQQID
VKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKAGKAS
FAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMITGAAQADVAI
LVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEITSKLR
HFLKQAGFKESDVAFIPTSGLGGDNLVSRSNSGELTQWYKGPCLTEQIDSFKSPQRSVEK
PFRLCVSDVFKDQGSGFSVTGKIEAGYVQTGDRLLAMPPNETCTVKGITLHDEAVDWAAA
GDHVSLTLTGMDIIKINVGSVFCYPKEPIRACTRFRARVLIFNFEIPITQGFPVLLYYQT
VSEPATIKKLVSVLHKSTGEVIKKKPKCLTKGQNALIEIHTQRPIALELYKDFKELGRFM
LRYSGSSIAAGVVTEIKD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccacaggaacgtgcgtggatacaactacgacgaagattttgatgatgatgat
ctctatggccagtctgtggaagatgattattgcatttcaccagcaacagctgctcagttt
atttactcaaaaagggagaaacccacaactttcgctgagccattagaagaagaatttggg
gatgaagaagaaccaggtgactgcgacacatctgacccatcactttctggacctgatcaa
gctcgcctttattcctgccttgatcatatgagggaagtgcttggggactctgtggctgag
caggagatgattcaagcagtgctcagcagtaaatttgatgtgtcgcaggccttggatctt
gttctcacacgaaatgacaaacagaatatgaagactgcttcttccgggaaatcagcaaaa
ggcaaagcaagagatgttcagtgcgcacaacctgattctgatactgtgcaaaaggtagca
aaaatgacagtgtctggaaggaaacaaacaatgggttttgatgttccatgtgcagttcct
gaagagaatgatcacactactggtatggctcgaaaggctccacctgccgaagaaatgtct
gggatggtggaaatggcctttaaagtagctgctgcttctcaagctgttcaaccatcagaa
gaggtgagtgctgcagctgtcccactgaagagctccagcaaagcaaagcagcaaatagat
gtgaaagccgaactggagaaaagacaaggaggaaaacaactgctcaatctggtagtaatt
ggtcatgttgatgctggcaaaagtactcttatgggtcacttactttatctgcttggaaat
gttaacaaaagaaccatgcataaatatgaacaggaatctaaaaaggctggaaaagcttca
tttgcatatgcttgggttttggatgaaactggcgaagaaagggaaaggggagtaaccatg
gatgtgggaatgactaaatttgagacaaaaacaaaagttattactttgatggatgctcct
ggacacaaagatttcattcctaatatgatcacaggggctgctcaggctgatgtggccatt
ttggttgtggatgccagtagaggagaatttgaagctgggtttgaggctggtgggcagaca
cgagagcatggacttctggttcgttctctaggagtaacgcagttggcagttgcagtcaat
aaaatggatcaggtgaactggcagcaggaaagatttcaggaaattaccagtaaacttcga
cattttcttaaacaagcaggctttaaggagagtgatgtagctttcatacccacaagtgga
ctgggtggtgataatctagtcagtagaagcaattcaggtgaacttacccagtggtacaaa
gggccatgtctgactgaacaaatcgattctttcaaatcgccacaaagatcagtggaaaaa
ccattcagactttgtgtatctgatgtttttaaagatcaaggatcaggattctctgtgact
ggtaaaatagaagcaggctacgtccaaactggagacagactactggcaatgcctcctaat
gaaacttgtacagtgaaagggattacgctgcatgatgaggcagttgactgggcagcagca
ggagatcacgtcagtctcactttgaccggtatggatatcatcaaaatcaatgttggatct
gtattctgttatcccaaggagcccatcagagcctgcactcgtttccgagctcgagtcctc
atctttaattttgagattcccattactcaaggttttcctgtacttctgtactatcaaact
gtaagtgaacctgccacaattaaaaaattagtaagtgttttgcacaagagtactggagaa
gttataaagaagaaacctaagtgcttgacaaaaggacagaatgcactaatagagatacat
actcagaggcccattgcccttgaattgtataaggacttcaaggagcttgggcgcttcatg
ctgcgctacagtgggtcttctatagctgcaggagttgtcactgagattaaagattga
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