Geotrypetes seraphini (Gaboon caecilian): 117356725
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Entry
117356725 CDS
T09159
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117356725 (DDX1)
03016 Transfer RNA biogenesis [BR:
gsh03016
]
117356725 (DDX1)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117356725 (DDX1)
Spliceosome [BR:
gsh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117356725 (DDX1)
Transfer RNA biogenesis [BR:
gsh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117356725 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
117356725
NCBI-ProteinID:
XP_033792231
UniProt:
A0A6P8R0M1
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All DBs
Position
3:97065412..97260068
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPI
IQIVYETLKDHQEGKKGKATVKTGGAVFNKWQMNPYDRGSAFAIDSDGLSCQSREVKEWH
GCRSTRGVNKGKYYYEVSCHDQGLCRIGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDLDKSVVKFSKNGKDLGLAFDVPSHLKTQTFFASCVLKNAELKF
NFGDEDFKFPPKDGFVALSKAADGHVVKSQQAGSAQVGQAKNLPNAPKALIIEPSRELAE
QTLNNIKQFKKGVDNPKLRELLIIGGVAAKEQLSALEQGVDIVVGTPGRVDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRIHSQIPQITSDGKRLQVVVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGRNHVKTDDVHAKDNTRPGAN
SSEMYSEAIKILKGEYAIRAIKEHKMDQAIIFCRTKLDCDNLEQYLVQQGGGPDRKGHQF
SCVCLHSDRKPHERKQNLERFKKGEARFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVASEKEKVWYHSCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLTCTISQVEADIKVPLDDFDGKVVYGQRRAAGGGLYKGHVDALAPTVEELAVLEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggctttcggagagatgggtgtgatgcctgagatagctcaagctgtggaagagatg
gattggcttttgcccacagatattcaggccgagtctatcccattgatcttaggaggtggt
gatgtgcttatggctgcagaaactggaagtggaaagacaggggctttcagtatcccaatt
attcagatagtttatgaaacgttgaaggaccatcaggaaggcaaaaagggcaaagccacg
gtcaagactggtggtgcagttttcaacaagtggcagatgaacccttatgacagaggatca
gcatttgcaattgattcagatggtctctcttgccaaagcagagaagttaaggagtggcat
ggatgtagatcaactagaggagtaaataaagggaaatactattatgaagtatcctgtcat
gatcaaggtttatgcagaattggatggtctaccatgcaggcttccttggatcttggtact
gacaaatttggctttggctttggtggaacaggaaagaaatcgcataacaagcagtttgat
agctatggagaggaattcactatgcatgatactattggctgctatttagatttggacaaa
agcgtggtcaagttctccaaaaatggaaaagatcttggtcttgcctttgatgttccttca
catttgaaaacccaaacattttttgcatcttgtgtactgaagaatgcagaactgaaattc
aattttggtgatgaagacttcaagtttccaccgaaagatggttttgttgcactctctaag
gctgctgatggtcatgttgtgaagtcacagcaggcaggaagtgcacaagtgggtcaagca
aagaatcttcctaatgctccaaaagcgctgatcattgaaccttccagagaattagcagaa
cagactttgaacaacatcaagcaatttaaaaaaggtgttgataatcctaaattaagggaa
ctcttgataattggtggtgtggctgcaaaggagcaactatctgctctggagcaaggggta
gatattgttgtgggaactccaggaagagtggatgacctagtgtccacaggaaagctcaac
ttgtctcaagttagatttctggttcttgatgaagctgatggtcttctttctcaaggttat
tcggattttatcaacagaatacattctcagattcctcagatcacttcagatgggaagaga
ttgcaggtggttgtctgctctgcaacactccactcttttgatgtgaagaaattatcagag
aagattatgcatttcccaacatgggtagatctaaagggtgaggactcggtcccagaaact
gtgcaccatgttgttgttcctgtgaatcctaaagctgacaaactgtgggaacgacttgga
agaaatcatgtgaaaactgatgacgtccatgcaaaggataacacaagacctggtgctaat
agttcagaaatgtattctgaagccattaaaattttgaagggagaatatgctattcgagca
atcaaagaacacaagatggatcaagcaattatattttgcagaactaaactagactgtgat
aacctagaacaatatcttgtccaacaaggaggaggtcctgatagaaaagggcaccaattt
tcatgtgtatgcctgcacagtgacagaaaaccccatgaaagaaaacaaaatttggaaaga
tttaagaaaggagaggcaaggttcctcatctgtactgatgtagctgccagagggattgat
atccgtggtgtcccatatgttatcaatgtcactcttcctgatgaaaagcaaaactatgtt
catcgcattggacgagttggtagagctgaaagaatgggtctggctatttctcttgtggca
tcagaaaaagagaaggtttggtatcattcgtgcagtagtcgtggaaagggctgctataac
accagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagctgctaggg
gagattgaggaacatctgacctgtaccatatctcaagtggaggccgatataaaggtacca
ttagatgattttgatggaaaggttgtctatggacaaagaagagctgctggtggtggactg
tacaaaggtcatgttgatgctttggcacccactgtggaagagctggctgtccttgaaaaa
gaagctcagacatctttcctacatcttggctaccttcccaatcagctcttcagaacattc
tga
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