KEGG   Geotrypetes seraphini (Gaboon caecilian): 117356738
Entry
117356738         CDS       T09159                                 
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
gsh  Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04137  Mitophagy - animal
gsh04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:gsh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117356738 (VCP)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    117356738 (VCP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gsh03019]
    117356738 (VCP)
   03009 Ribosome biogenesis [BR:gsh03009]
    117356738 (VCP)
   04131 Membrane trafficking [BR:gsh04131]
    117356738 (VCP)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gsh04147]
    117356738 (VCP)
Messenger RNA biogenesis [BR:gsh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     117356738 (VCP)
Ribosome biogenesis [BR:gsh03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    117356738 (VCP)
Membrane trafficking [BR:gsh04131]
 SNARE
  SNARE associated proteins
   Others
    117356738 (VCP)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    117356738 (VCP)
Exosome [BR:gsh04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   117356738 (VCP)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_5 AAA_33 AAA_2 AAA_22 TIP49 AAA_14 NPHP3_N RNA_helicase Vps4_C AAA_28 nSTAND3 Parvo_NS1 Mg_chelatase AAA_17 IstB_IS21 ATPase_2 AAA_18 AAA_7 ATPase DUF815 ABC_tran AAA_24 TsaE NB-ARC ResIII Viral_helicase1 NACHT Sigma54_activat SLFN-g3_helicase KAP_NTPase Zot
Other DBs
NCBI-GeneID: 117356738
NCBI-ProteinID: XP_033792256
UniProt: A0A6P8R0P7
LinkDB
Position
1:114817736..114948221
AA seq 806 aa
MASGTDSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPLD
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDIDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGSQGG
AGPSQGAGGGGTGNVYNEDNDDDLYG
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggcttcgggcacggactctaagggcgatgacttatctactgcaattctgaagcagaag
aatcggcctaatcggttaattgttgatgaagccatcaatgaggacaacagtgtggtttcc
ttgtcccaggccaaaatggatgaattgcagctgttccgaggggacactgtgcttctaaaa
gggaagaagaggagagaagctgtttgcatcgtcctgtctgatgacacttgttcggatgaa
aaaattcgtatgaacagagttgttcgcaacaacctccgagttcgcttgggtgatgtgata
agtatccagccttgcccagatgtgaagtatgggaaacggattcatgtgctaccattggat
gacacagttgaagggatcactggcaatttatttgaggtgtacctcaagccgtacttcctg
gaagcttacagaccgatcaggaaaggggacatattcttggttcgtggaggaatgcgtgca
gtagaatttaaagtggtggagacggatccaagcccttactgcattgtggctccagacaca
gttatccattgtgaaggtgaacccatcaaacgagaggatgaggaggagtctcttaatgag
gtgggatatgatgacattggtggctgccggaaacagcttgctcagattaaagaaatggtt
gagctccctctcagacatccagcactcttcaaagccattggtgtgaagcccccacgtggg
attcttctgtatggaccaccaggcactgggaagactttgattgctcgtgctgtggctaat
gagaccggggctttctttttcttgattaatggtcctgagattatgagcaaactggcagga
gagtctgagagtaacctgcggaaagcttttgaagaggcagagaagaatgctcctgcaatt
atcttcattgatgagctggatgctatagctccaaagagagagaagacacacggtgaggtg
gagcggcgcatagtctcccaattgctgactcttatggatggcttgaagcagagagcgcat
gtgattgtcatggctgctaccaacagacctaacagcattgacccagcacttcggcgattt
ggccgtttcgacagagaggtagatattggtattcctgatgccactggtcgcttggaaatc
ctccagattcacaccaagaatatgaagctgtcagatgatgttgatctggagcaggtagct
aatgagacccatggccatgtgggtgctgacttggcagcactgtgctctgaggctgcactt
caagccatcaggaagaagatggatctaattgacctggaagatgaaactatagatgcagaa
gtgatgaactctttggctgtgacaatggacgacttcaggtgggctctgagccagagtaac
ccatcagcactccgtgaaactgtggtagaagtgcctcaagtcacatgggaagatattggt
ggtcttgaagacgtgaagagagagctgcaggagcttgtacagtatcctgtagagcatcca
gacaagttcctaaagtttggaatgactccttccaaaggtgtgctgttctatggtccacct
ggttgtggcaagaccctgttggccaaagctattgccaatgaatgccaggccaacttcatc
tccatcaaaggacctgagctactcactatgtggtttggagagtccgaagcgaatgtcaga
gagatctttgataaggctcggcaggctgctccatgtgtgctctttttcgatgagctggat
tctattgctaaggcacgtggtgggaacatcggagatggcggaggtgctgcagaccgtgta
atcaatcagattctgaccgaaatggatggtatgtctaccaagaagaatgtttttatcatt
ggagcaacaaaccgtcctgatatcattgatcctgccatcctgcgcccaggacgtctggac
caacttatttacatcccattgcctgatgagaagtcacgtgtggccatcctgaaggctaat
ctgaggaagtcaccagttgctaaggacatagatctggatttcttggcaaagatgaccaat
ggcttttctggagctgacctgaccgaaatctgccagcgtgcctgtaagctggccatccga
gaatctatcgaaagtgagatcaggcgggagcgtgagaggcagacaaacccctcagccatg
gaggtggaagaagatgacccagtgcctgagattcgaagagatcattttgaggaggccatg
cgttttgctcgccgctctgtcagtgataatgacatcagaaagtatgagatgtttgcacag
accttgcagcagagccgaggttttggcagctttagattcccatctgggagccaaggtgga
gctggaccaagccagggtgctggaggcggtggcactggcaatgtctacaacgaggacaac
gatgatgacctgtatggctaa

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