Geotrypetes seraphini (Gaboon caecilian): 117356738
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Entry
117356738 CDS
T09159
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04137
Mitophagy - animal
gsh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117356738 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117356738 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117356738 (VCP)
03009 Ribosome biogenesis [BR:
gsh03009
]
117356738 (VCP)
04131 Membrane trafficking [BR:
gsh04131
]
117356738 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117356738 (VCP)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
117356738 (VCP)
Ribosome biogenesis [BR:
gsh03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
117356738 (VCP)
Membrane trafficking [BR:
gsh04131
]
SNARE
SNARE associated proteins
Others
117356738 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117356738 (VCP)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117356738 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
TsaE
NB-ARC
ResIII
Viral_helicase1
NACHT
Sigma54_activat
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
117356738
NCBI-ProteinID:
XP_033792256
UniProt:
A0A6P8R0P7
LinkDB
All DBs
Position
1:114817736..114948221
Genome browser
AA seq
806 aa
AA seq
DB search
MASGTDSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPLD
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDIDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGSQGG
AGPSQGAGGGGTGNVYNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggcacggactctaagggcgatgacttatctactgcaattctgaagcagaag
aatcggcctaatcggttaattgttgatgaagccatcaatgaggacaacagtgtggtttcc
ttgtcccaggccaaaatggatgaattgcagctgttccgaggggacactgtgcttctaaaa
gggaagaagaggagagaagctgtttgcatcgtcctgtctgatgacacttgttcggatgaa
aaaattcgtatgaacagagttgttcgcaacaacctccgagttcgcttgggtgatgtgata
agtatccagccttgcccagatgtgaagtatgggaaacggattcatgtgctaccattggat
gacacagttgaagggatcactggcaatttatttgaggtgtacctcaagccgtacttcctg
gaagcttacagaccgatcaggaaaggggacatattcttggttcgtggaggaatgcgtgca
gtagaatttaaagtggtggagacggatccaagcccttactgcattgtggctccagacaca
gttatccattgtgaaggtgaacccatcaaacgagaggatgaggaggagtctcttaatgag
gtgggatatgatgacattggtggctgccggaaacagcttgctcagattaaagaaatggtt
gagctccctctcagacatccagcactcttcaaagccattggtgtgaagcccccacgtggg
attcttctgtatggaccaccaggcactgggaagactttgattgctcgtgctgtggctaat
gagaccggggctttctttttcttgattaatggtcctgagattatgagcaaactggcagga
gagtctgagagtaacctgcggaaagcttttgaagaggcagagaagaatgctcctgcaatt
atcttcattgatgagctggatgctatagctccaaagagagagaagacacacggtgaggtg
gagcggcgcatagtctcccaattgctgactcttatggatggcttgaagcagagagcgcat
gtgattgtcatggctgctaccaacagacctaacagcattgacccagcacttcggcgattt
ggccgtttcgacagagaggtagatattggtattcctgatgccactggtcgcttggaaatc
ctccagattcacaccaagaatatgaagctgtcagatgatgttgatctggagcaggtagct
aatgagacccatggccatgtgggtgctgacttggcagcactgtgctctgaggctgcactt
caagccatcaggaagaagatggatctaattgacctggaagatgaaactatagatgcagaa
gtgatgaactctttggctgtgacaatggacgacttcaggtgggctctgagccagagtaac
ccatcagcactccgtgaaactgtggtagaagtgcctcaagtcacatgggaagatattggt
ggtcttgaagacgtgaagagagagctgcaggagcttgtacagtatcctgtagagcatcca
gacaagttcctaaagtttggaatgactccttccaaaggtgtgctgttctatggtccacct
ggttgtggcaagaccctgttggccaaagctattgccaatgaatgccaggccaacttcatc
tccatcaaaggacctgagctactcactatgtggtttggagagtccgaagcgaatgtcaga
gagatctttgataaggctcggcaggctgctccatgtgtgctctttttcgatgagctggat
tctattgctaaggcacgtggtgggaacatcggagatggcggaggtgctgcagaccgtgta
atcaatcagattctgaccgaaatggatggtatgtctaccaagaagaatgtttttatcatt
ggagcaacaaaccgtcctgatatcattgatcctgccatcctgcgcccaggacgtctggac
caacttatttacatcccattgcctgatgagaagtcacgtgtggccatcctgaaggctaat
ctgaggaagtcaccagttgctaaggacatagatctggatttcttggcaaagatgaccaat
ggcttttctggagctgacctgaccgaaatctgccagcgtgcctgtaagctggccatccga
gaatctatcgaaagtgagatcaggcgggagcgtgagaggcagacaaacccctcagccatg
gaggtggaagaagatgacccagtgcctgagattcgaagagatcattttgaggaggccatg
cgttttgctcgccgctctgtcagtgataatgacatcagaaagtatgagatgtttgcacag
accttgcagcagagccgaggttttggcagctttagattcccatctgggagccaaggtgga
gctggaccaagccagggtgctggaggcggtggcactggcaatgtctacaacgaggacaac
gatgatgacctgtatggctaa
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