Geotrypetes seraphini (Gaboon caecilian): 117356741
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Entry
117356741 CDS
T09159
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117356741 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117356741 (MSH2)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117356741 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
117356741
NCBI-ProteinID:
XP_033792255
UniProt:
A0A6P8Q9C5
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Position
3:complement(381557310..381816868)
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AA seq
932 aa
AA seq
DB search
MAVQPKEKLSLDSSAESGFLQFYFSMPEKPDTTVRVFDRSDYYTVHGSDALFAAKEVFKT
NGVVKYLGSGSKKLESVVLSKMNFESVVKDLLLVRQYRVEVYRNKAGSKSSKEHDWYLAY
KASPGNLTQFEEILFSSNNMATAAGVVGVKLATADGQRLIGVGYVDSTLRKLGVCEFPDN
DQFSNLEALLVQIGPKECVLPSGETAGDMGKLRQIVQRGGILITDRKKGEFTTKDTVQDL
NRLLKARKGEQVTSAALPEMEKQVAMSSLSAVIKYLELLSDESNFGQFELTTFDLSQYMR
LDNAAVSALNLFQGSTEDTSGTQTLAGLLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN
LVEAFAVDAELRQCLQEDLLRRFPDFNRLAKKLQRQTANLQDCYRLYQAINQLPIVVQTL
EKYEGAHQMLLLAVFVTPVNDLITDFFKFQEMIETTLDMDQVENHEFLVKASFDPNLMEL
REKMNELEKRMQSCLSSAARELGLEAAKTIKLESNSQLGHYFRVTCKEEKALRNNKRFST
LDIQKNGVRFTNSKLSSFSEDYVKCREEYEEAQNAIVKEIINISSGYMEPIQTLNDVIAQ
LDAVVSFAYASNVAPVPYTRPVILDKGQGRIVLKAARHPCIEVQDEIAFIPNDIIFEKDK
QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEVSIVDCILARVGAGDSQLKG
VSTFMAEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYIATQIGSFCLFA
THFHELTSLADHVMTVNNLHVTALTTDESLTMLYRVKQGICDQSFGIHVAELANFPKHVI
QNAKAKALELEEFQNIGKTEEDEEGSSAKKRHREREEGEKIIQGFISEVKTLPIAEMSEE
DVKTKLKYLKAEVLAKNNSFVNEIVARIKATL
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagcctaaggaaaagctgtcgctggacagcagtgcggagagtggatttctg
caattttatttctccatgcccgagaagccggacactaccgtgcgagtatttgacagaagc
gactactacacggtgcacggtagtgatgcgctgttcgcagcaaaggaggtgtttaagact
aatggcgttgttaaatacctgggctcagggagcaagaagcttgagagtgtcgtactcagt
aagatgaactttgagtctgttgtgaaggatctgcttctggttcgtcagtaccgagttgaa
gtctacaggaataaagctggcagcaagtcatccaaggagcatgactggtacttggcttac
aaggcttccccaggtaaccttacccagtttgaggagatcctctttagcagtaataacatg
gcgactgcagctggagttgtgggcgttaagctggctactgctgatgggcaaagattaatt
ggcgttggctacgttgattcaacactcaggaagctgggggtgtgtgagtttccggacaat
gatcagttttccaacctggaagctctcctggttcagattggtcccaaggaatgtgtgctg
cccagtggggagactgcaggagatatgggaaaactgagacagattgttcaaaggggtggc
attctgataacggacaggaaaaaaggagaattcaccactaaagacactgtgcaagatctt
aaccggctgctgaaagcgaggaaaggggaacaggtgacgagcgcggcgctgccagaaatg
gaaaagcaggttgctatgtcttcattgtctgctgtgatcaaatacttggaactgttatct
gatgaatctaactttggacaatttgaacttaccacctttgatctgagccagtatatgagg
ctggataatgcagctgtcagtgcgcttaacctctttcagggttcgacggaagatacgagt
ggcacgcagactctggccggactgttgaacaaatgcaaaacccctcagggtcagaggttg
gttaatcagtggatcaagcagccgcttatggacaagaacagaatcgaggaaaggttaaac
ttggtagaggcctttgcggtcgatgcagagctgagacaatgtcttcaggaagacctcctt
cgccgtttccctgatttcaaccgtctggcaaaaaagcttcagaggcaaactgcaaacttg
caggactgttaccgactatatcaggccatcaaccaactacctattgttgtccaaacgctt
gaaaaatatgaaggagctcaccagatgttgttgctggctgtgtttgtaacccccgtcaat
gatctcattactgatttcttcaagtttcaagaaatgatagaaactactttggacatggat
caggttgaaaaccatgaatttctggtgaaagcgtcctttgatccaaacctgatggagctg
agagagaagatgaatgagctggagaagcgtatgcagtcttgcctgagtagtgcagcccgg
gaattaggtttggaggctgctaagactataaaactggagtccaattctcagttggggcat
tacttccgtgtcacttgcaaggaggagaaagcactgcgaaacaacaagagattcagtact
ctagatattcagaagaatggcgtgagatttaccaacagcaagctgagctctttcagcgaa
gactatgtcaaatgtagagaagagtatgaagaagcacagaatgctattgtgaaagagatc
attaatatttcttcaggctacatggaaccaatccagactctgaacgacgtgattgctcag
ttggatgctgttgtgagttttgcttatgcatcaaatgttgcgcctgttccctacacacgt
ccagtcatccttgataaagggcaaggaagaatcgtcctgaaggctgccagacatccttgc
attgaagttcaggatgagatagcattcatccccaatgacatcatctttgagaaagacaaa
cagatgttccatattatcacaggccctaatatgggaggcaaatcaacgtacatccgccag
actggagtgatagttctcatggcccagattggatgctttgtaccttgtgattcagcagag
gtgagcattgtggactgtatcctggcccgagttggagcaggcgacagtcaactcaaagga
gtctccactttcatggctgaaatgttagaaacggcctccatcctgagatcagcaacagag
aattccctaattattattgatgaactgggaagggggacctccacgtacgatggctttggc
ctggcgtgggctatatctgaatacattgctacccaaattggttccttctgtttgtttgca
actcattttcatgagctgacttcactggcagatcacgtcatgacggtgaataacttgcat
gttacggctttaaccacagatgagtccctaacgatgctttaccgtgtaaagcaaggtatt
tgtgatcagagttttgggatacacgtggcagagcttgctaattttcctaaacacgttatt
cagaatgctaaggcaaaagcactggaattggaggagttccaaaatattggaaaaacagaa
gaagatgaggaaggctcatctgcgaagaaacgccatcgggaaagagaggaaggtgaaaaa
ataatccagggcttcatttctgaggttaaaacgctgccaatagcggagatgtccgaggaa
gacgttaaaaccaaattaaaatacttgaaggctgaagtattagctaaaaataacagcttt
gtgaatgaaattgttgcacgaataaaggctacactctga
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