Geotrypetes seraphini (Gaboon caecilian): 117356853
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Entry
117356853 CDS
T09159
Symbol
HDAC2
Name
(RefSeq) histone deacetylase 2 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03082
ATP-dependent chromatin remodeling
gsh03083
Polycomb repressive complex
gsh04110
Cell cycle
gsh04330
Notch signaling pathway
gsh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117356853 (HDAC2)
03083 Polycomb repressive complex
117356853 (HDAC2)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117356853 (HDAC2)
04350 TGF-beta signaling pathway
117356853 (HDAC2)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117356853 (HDAC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gsh03036
]
117356853 (HDAC2)
Enzymes [BR:
gsh01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117356853 (HDAC2)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
117356853 (HDAC2)
HDAC complexes
Sin3A-HDAC complex
117356853 (HDAC2)
BRAF-HDAC complex
117356853 (HDAC2)
REST complex
117356853 (HDAC2)
SHIP complex
117356853 (HDAC2)
MiDAC complex
117356853 (HDAC2)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
117356853 (HDAC2)
Heterochromatin formation proteins
Other heterochromatin formation proteins
117356853 (HDAC2)
Chromatin remodeling factors
NuRD complex
117356853 (HDAC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Dehydrin
Motif
Other DBs
NCBI-GeneID:
117356853
NCBI-ProteinID:
XP_033792532
UniProt:
A0A6P8PWQ5
LinkDB
All DBs
Position
3:2027115..2372179
Genome browser
AA seq
531 aa
AA seq
DB search
MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
EKIKQRLFENLRMLPHAPGVQMQTIPEDAVQEDSGDEDGEDPDKRISIRASDKRIACDEE
FSDSEDEGEGGRRNVADHKKGIKKARIEEDKKETEDKKSVPSQNNLATPERQMAVYGSRK
KAGSLCRFVFSSAWYLFSDGIVQFIWQVVLCVSNYEAEISLCHGRALCDSI
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacagtcagggcggagggaagaagaaggtctgctactactacgacggtgatatt
ggaaattactattatgggcagggtcaccctatgaaaccacacagaatccgcatgacgcac
aatctactgctgaactatggcctgtatagaaaaatggaaatctatcgaccccacaaggca
acagctgaagaaatgaccaagtaccacagcgatgaatacatcaagtttctccgatcaata
cggccagacaacatgtcggagtacagcaagcagatgcagagatttaatgtcggagaagat
tgtcctgtgtttgacgggctgtttgagttttgtcagctctcaactggaggctctgttgct
ggagcagtaaaactgaacagacagcagacggacatggcagtaaactgggctggaggtctg
caccatgcgaagaaatctgaggcttctggcttctgctatgtgaatgacattgttctggcc
atcttggagttgctaaagtaccaccagcgagtgctctatattgacatcgatatccaccat
ggtgatggtgttgaagaagctttttatacaactgacagagtaatgactgtttcgttccac
aagtatggggagtatttccctggcacaggagacctgcgggatattggagcaggaaaaggc
aaatactatgctgttaacttccccatgagagacgggatagatgacgagtcttatgggcaa
atctttaagccgattatttccaaagtgatggagatgtaccagcccagtgctgtggtgctg
caatgcggggcggattcgctatcaggggatcgactgggatgtttcaatcttactgtgaaa
ggtcatgctaaatgtgtggaggttgtaaagacctttaatttgcctctgctgatgcttggt
gggggtggatacacgatccgtaatgttgcacgctgttggacatatgagacagccgttgca
ttagattgcgaaattcccaatgaactgccctataatgactactttgaatattttggacca
gacttcaaacttcatatcagtccttccaacatgacaaaccagaacacccctgagtatatg
gaaaaaatcaagcagcggttgtttgagaatttgcggatgttaccacatgcacctggtgta
cagatgcagactatccctgaggacgcagtgcaagaggacagtggggatgaggatggtgaa
gatcccgataaacgcatttccattcgtgcctcagacaagagaatagcttgtgatgaagaa
ttttcagactcagaggatgagggtgaaggaggaagacgcaatgtggcagatcacaagaag
ggaatcaagaaagccagaatcgaagaggataagaaggaaactgaagacaaaaaatcagtg
ccaagtcagaacaacctagcaacccctgaacgtcagatggctgtgtacggcagcaggaag
aaggcgggttctctgtgtcgatttgtcttctctagtgcttggtatttattttcagatggt
attgtgcagtttatttggcaagttgtgctttgcgtttctaattatgaagcagaaatttct
ctttgccatggccgtgctttatgtgatagtatttaa
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