Geotrypetes seraphini (Gaboon caecilian): 117357393
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Entry
117357393 CDS
T09159
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117357393 (SCAF8)
03041 Spliceosome [BR:
gsh03041
]
117357393 (SCAF8)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117357393 (SCAF8)
Spliceosome [BR:
gsh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
117357393 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Mucin
MCM
Motif
Other DBs
NCBI-GeneID:
117357393
NCBI-ProteinID:
XP_033793782
UniProt:
A0A6P8Q108
LinkDB
All DBs
Position
3:179274361..180058564
Genome browser
AA seq
1677 aa
AA seq
DB search
MIAEDELWGCCKCLADVSRSSLKLYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSV
EKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQDKDVFAPRFSNNIVNTFQNLYRCPSDDK
SKVVRVLNLWQKNNVFKSEIIQPLLDMAAGIVPPVVTPVLPSTTATMSNNTPGTPVTPVT
PASVVQGLPDPWVAQIANSDTLAAVAQILQSPQGQQLQHLVQTLQIQQQKPQPSLLQALD
AGLVVQLQALTAQLTAAAAASSTLNPLEQSVSLSKKLLDRFDFGDESEHAEDSKKETSST
QLANLNRNCLLPSKFPLPPYLSWIDSSPLVSESMNNSIFHQLAEHLQQQNFEHLRLQLLE
QQQSGKVTPQESQEEIFESEHSDSPSQGSSQQQFQEPESKLDELMDVQQEDMEIDEGQDI
TEEELFEQEEKKSVVGSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRK
SSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATPQDLTNLFEEFG
QIESINMIPPRGCAYVCMVHRQDSYRALQKLSTGSCKIGSKIIKIAWALNKGVKTEYKQF
WDVDLGVTYIPWEKVKVDDLDSFSEGGMIDQETVNKEWETSKSTESIKETTITTTTAAIT
TSTTTITTTSATATATTTATTTTQSETIPKETVVTPQPAVVTTQSEVYTQPEVYTQPEAY
TQPEAYTQPVAMLQRGTQPIGLDWSIENDQIPVAPAVPSVSLVPPAFPVSMSIPPPGYTS
IPPPPFLRPTFDPTQPPPGYMPPPVPPPPVPPPVPPPIPPPTIPPPTIPPPPISSAVPNS
FTQPPLSFAQETVKDFNNLLLPVGSIPTVSTGHVYNPPSSRAEPEQKGLQLSDHRVTSTE
SAAALVAQNASRSSGILGMLPLPGGPSIHHLNISARLPGMPFLDIRPGIIPQTPASRFNI
MQPGIPPPQNIPPPPIIDHSLHALTQSTFPPVDIFNQKERDFGTPVKQNDNFSNQDKKIS
LNSDVQQERDQDYRFPPVESQENLRKPPSIEGVHKSGRENLGKSKAEIKNGQGQPATNVK
DCIRRSIAEGLNLERRTSEARADLGRSAVETHDDSGRPTADAHDDSKRTTAGAHNDPGRP
TADAHDPGRPSADAHDDPGRPGADMHDSLRLSAADSLDNVRRPAAGILDGLCLGRPEIES
QDGLRRPDMESQVADVRHGLLRPPIDMRLGLLRPPPMDIRLGLLRPPPMDIRLGLLRPPP
ADIRVGLLRPPPMDIKDGLLRPPFDTREPFGRPPFDAREPFSRPPFDAREPFDRPPFDAR
EPFDRPPFDSREPFDRPPFDAREPFDRPPFDAREPFDRPPYDAREPFDRPPFDAREPFDR
PPFDAREPFDRPPFDAREPFDRPPFDALEPFDRPPFDGREPFDRPPFDIREPFDRPPFEA
REHFGRPPFDAREHFGRPPFDIREHFGRPPLEGREHFGRPPLDIHGRRDHFAFNSDKHWG
HKGDYDERQYHTSPHFGSPKGFHEDRDRVRHGNFRFDARSSSNWNRGFEQECNTDFDDHK
RSWERQRDDRDDRDFYFDRDTNDNKFGKDREQSNWSPSHSEVFEYFAESSSTQKTKVPQI
NGENAETQSQPPAVQKKNDPELSEKLTSSDEISQEKNDTDADIENQPEVESTETEGT
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgatagcagaggatgagctctggggctgctgcaaatgtttggcggatgtttccaggagt
agcctcaagttgtactcgctaaatgattacaagccccctatttccaaggctaaaatgacg
cagattactaaagcagctatcaaggcaataaagttctataaacatgtggtgcagagtgtt
gaaaaattcattcaaaaatgtaaaccagaatacaaggtgcctggattatatgtcattgat
tcaattgttcggcagtctcgtcatcagtttggtcaggacaaggatgtgtttgctcccaga
ttcagcaacaatatcgtcaacacttttcagaacctgtaccgttgtccctctgatgacaag
agtaaagttgtcagagtgctaaatttgtggcagaagaacaatgtcttcaagagtgaaatt
atccagcctcttctggatatggcagctgggattgttccacctgttgtcacacctgtgttg
cccagtacgacggctactatgagcaacaacacaccaggaacgccggtgactcctgttaca
ccagccagtgtggtacaaggtctccctgacccttgggtggctcagattgcaaattcagat
acacttgctgctgtagcacagatcttacagagtcctcagggccagcagctgcagcattta
gtacaaacgttacagatccagcagcagaaacctcagccctctctgcttcaggcattagat
gctggcctggttgtacaactgcaggccctaacagcacaacttactgctgcagcagcagca
tccagcacactgaatccactggaacagagtgtctctcttagcaagaaactattggacagg
tttgattttggagatgaatctgagcatgctgaagattctaaaaaagaaacttcctctacc
caactagctaatctgaacagaaattgtttgctgccgtctaagttccccctgcccccttat
ttgtcatggattgattccagccctcttgtgtcagagtccatgaacaactcaatctttcat
caactggctgaacatctgcagcagcagaattttgagcatctccgactgcagctgttggag
caacagcagtcaggaaaggtgacacctcaggagagtcaggaagagatctttgaatcagag
cattctgattctccctcacagggcagcagccaacagcagttccaagagcctgagtcaaag
ctggatgaattgatggatgtacagcaagaggatatggaaatagatgaaggacaagatata
accgaagaagagctctttgaacaagaagaaaagaaatcggtagttggttcaaggtcaagg
acacactcaagatcccgatcaagatcccctaggaaaagaagatctagatcccgttctggg
tctagaaaacgtaagcacaggaagcgctctcgatcccgatccagggagagaaagagaaag
tcatctcgatcctactccagtgagaggagagctagggagagagagaaggaaagacagaaa
aaaggacttcctccaataagatccaaaacactcagtgtttgcagtactactctttgggtt
ggtcaggttgacaaaaaggcaacacctcaggacttaaccaacttgtttgaagagtttgga
cagattgaatcaattaatatgattccacccagaggttgtgcttatgtctgcatggttcat
agacaagattcatatcgtgcacttcagaaactgagcactggatcctgtaaaattggctcc
aaaattattaagattgcctgggctctaaacaaaggtgtgaaaacagagtacaaacagttc
tgggatgttgatcttggtgtcacatatataccttgggaaaaagtgaaagtggatgacctg
gatagtttttctgaaggtggcatgattgaccaggaaactgtaaataaagaatgggaaact
tcaaagagcactgaatccatcaaagaaaccactattacaaccactactgccgctatcacc
accagcaccactaccatcaccaccacttccgcaactgcaacagcaaccacaactgcaaca
actactactcagagtgaaactattcctaaggaaacagtggtaacaccacaaccagcagta
gtaaccacacagtcggaggtttatacacagcctgaggtttatacgcaaccagaggcttat
acacaaccagaagcttatacacagcctgttgctatgttacagagagggacacaacccatt
ggtctggattggtcaatagaaaatgatcagattcctgtggccccagctgtaccttcagtt
agtttagtccctccagcatttcctgtttcaatgtcgattcctccaccaggatatacttca
atcccaccacctcctttcttaagaccaacctttgaccctacacagccaccacctggttat
atgccgccgccagtgccgcctccaccagtgccaccaccagtgccgccaccaataccgcca
cccacaattccaccacctacgattccaccacctcctatttcttctgctgttccaaactct
ttcacacagcctcctttatcttttgctcaagagaccgtgaaagatttcaataacctcctt
ctacctgttggttctattccaacagtatcaactggacatgtttataatcctcctagcagt
cgtgcagaaccagaacagaaaggattacaactgtctgatcatcgtgttacttctactgag
agtgctgctgctttagttgcccagaatgcctcaagaagttctggaattttgggaatgctg
ccactaccaggaggtccatctatccaccatttaaatatctctgctcgattgcctggaatg
cctttcttagatatccgtcctggaataataccacaaacacctgcatcaagatttaatata
atgcagcctggaataccacctcctcaaaatattccacctccaccaataattgatcattcg
ttacatgcattgactcagagcactttcccaccagttgatatttttaaccaaaaagagaga
gattttggaacaccagtaaaacaaaatgataatttttctaatcaagacaaaaaaatatca
cttaacagtgatgttcagcaggaaagagaccaggattatcgttttcctcctgtagaaagt
caagagaaccttagaaaaccaccatcaatagaaggtgtgcacaaaagtggaagagagaat
ttgggaaaatcaaaagcagaaatcaaaaatggtcaggggcagccagcaacaaatgtaaaa
gactgtatacgaagatcaatagcagaaggcctaaatttggaaagaagaacatcagaagcc
cgtgcagatctaggaagatcggctgtagaaactcatgatgattcaggaaggccaactgct
gatgcccatgatgattcaaaaagaacaactgctggtgcccataatgatccaggaaggcca
actgctgatgcccatgatccaggaaggccaagtgcagatgcccatgatgatccaggaagg
ccaggcgcagacatgcatgatagtttaagattgtcggcagcagattcccttgataatgta
aggagaccagcagcaggcattcttgatggtctttgtctaggcaggccagagatagaatct
caagatggtctaagacgaccagacatggaatcccaagtggcagatgttcgacatggtctc
ctcaggcctccaatagatatgagacttggtcttctcaggccaccaccaatggatattaga
cttggccttctcaggccaccaccaatggatattagacttggtcttctcaggccacctcca
gcagatattagagttggacttctcaggccaccaccaatggatattaaagatggtcttcta
aggccaccatttgacacaagagaaccctttggcagaccaccatttgatgcaagggagcca
tttagcagaccaccatttgacgcaagggagccttttgatagaccaccatttgatgcaagg
gagccttttgacagaccaccgtttgactcacgggagccctttgacaggccaccctttgac
gcacgggagccctttgacaggccaccctttgacgcacgggagccctttgacaggccaccc
tatgacgcacgggagccctttgacaggcccccatttgacgcacgggagccctttgacaga
cccccatttgacgcacgagagccctttgacaggcccccatttgatgcacgagagcccttt
gacaggcccccatttgacgcactggagccttttgacaggccaccgtttgacggaagggag
ccctttgacaggccaccatttgacataagggagccctttgacaggccaccatttgaggca
agggaacattttggaagaccaccatttgacgcaagagaacattttggaagaccaccattt
gatattagagaacattttggaagaccaccacttgaaggaagggaacattttggaaggccg
cctttagatatccatggtcgaagagaccattttgctttcaattcagacaaacactggggt
cacaaaggagattatgatgaaagacagtatcatacatcacctcactttggaagccctaag
ggttttcatgaagacagggaccgagttcgacatggaaacttcagatttgatgctagaagt
agctccaattggaatagaggatttgaacaagagtgtaacacagattttgatgaccacaaa
agatcctgggaaaggcagagggatgatagggatgacagagatttttactttgacagagat
actaatgacaacaaatttggaaaagacagagaacagagcaactggtctccttcacattca
gaggtttttgaatattttgcagaaagcagttcaacacaaaaaactaaagtgccccagata
aatggtgaaaatgcagagacacaaagccagccaccagcagtgcaaaaaaagaatgatcct
gaactttctgaaaaactgacatcatcagacgagataagccaagagaagaatgacacagat
gctgatatagaaaatcaaccagaggtagaaagcacagaaactgaggggacataa
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integrated database retrieval system
