Geotrypetes seraphini (Gaboon caecilian): 117357542
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Entry
117357542 CDS
T09159
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh00100
Steroid biosynthesis
gsh01100
Metabolic pathways
Module
gsh_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
117357542
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
gsh01006
]
117357542
Enzymes [BR:
gsh01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
117357542
Prenyltransferases [BR:
gsh01006
]
Terpene biosynthesis
Squalene/phytoene synthase
117357542
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
117357542
NCBI-ProteinID:
XP_033794194
UniProt:
A0A6P8QCR0
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Position
3:complement(122367682..122429031)
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AA seq
454 aa
AA seq
DB search
MACTNCKTAVSLFKRTLSLTPTQKPSSQRSLLTVNRWQERGLREGRIVQKCMPVQTHAVS
RIHPSCFRQQDSISESLKTCYKYLNETSRSFAAVIQALDGELRHAVCIFYLVLRALDTIE
DDMTIALETKIPMLLDFHTYLYKPEWRYAESKEKHGQVLEDFPTISLEFRNLAKNYRDVI
TDICHKTGVGMAEFLEKNVETLQEWDKYCHYVAGLVGIGLSRLFSVSELEDPIVGQDIEL
SNSMGLFLQKTNIIRDYLEDHLEGREFWPREVWSKYAKKLSDFAKPENIDMAVQCMNELI
TNALHHVPDVLTYLSRLKNQSVFNFCAIPQVMAIATMAACYNNPQVFKGVVKIRKGQAVT
VMMDATNIQAVKANIYQYADEIYQKIPLSNSSSRKTHRIILCIRNLSFPNGTLVSRNHFS
PVYLSCAMLLAALSWQYLSAMSQASDEYVQASEN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcctgcacaaactgtaagacggctgtttctctcttcaagagaactttgtccctaaca
ccaacccaaaaacctagcagccagcgttctctgttgactgtgaacaggtggcaggaaagg
gggttgcgagaaggcaggatcgtacaaaaatgtatgcctgtacagactcatgcagtctct
cgaattcacccttcctgctttcgccaacaggactccataagtgaaagtctgaaaacttgt
tacaagtatctaaatgagaccagcagaagctttgccgctgtcattcaggcactagatggg
gagctgcggcatgcagtatgtatattttacctggttctccgtgctctggacactatagaa
gatgacatgactattgccttagaaacaaagatccccatgttacttgattttcacacctac
ctttacaagccagaatggcgatatgctgagagcaaggagaagcatgggcaagtgcttgaa
gatttcccaacgatttccttggagtttcggaaccttgcaaagaattatcgggatgtcatt
actgatatatgccacaaaacaggcgtaggaatggctgagtttttggaaaagaatgtggaa
accttgcaggagtgggacaagtactgccactatgttgctggactagtgggaattggattg
tctcgtctgttctctgtatcagagctggaagatcctatagttgggcaagacatcgagctc
tcaaattctatgggccttttcctgcagaaaaccaatattattcgtgattacttagaggat
cacctggaggggcgtgagttctggcccagagaggtttggagcaaatatgctaagaagctg
tctgactttgctaagccagagaacattgatatggctgtgcagtgcatgaatgaactgatt
acaaatgctcttcaccacgtacctgatgtcctcacctatctatctcggctgaagaaccaa
agtgtgttcaatttttgtgccattccacaggtgatggctattgctactatggctgcctgt
tacaacaacccacaggtattcaagggtgttgtgaagattcggaaaggacaagctgtcacg
gtaatgatggatgccacgaatatacaggctgtcaaagctaacatttaccagtatgctgat
gagatttatcagaaaattccattgtcaaactcttcatctagaaagacacataggattatt
ctctgcatcaggaacttgagttttcctaatggcacactggtttcccgcaatcatttctca
ccagtctacttgtcatgtgctatgcttttggcagcactgagttggcagtacctaagtgca
atgtcccaagcctctgatgaatatgttcaagccagtgagaactga
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