Geotrypetes seraphini (Gaboon caecilian): 117357704
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Entry
117357704 CDS
T09159
Symbol
VPS54
Name
(RefSeq) vacuolar protein sorting-associated protein 54 isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gsh01009
]
117357704 (VPS54)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117357704 (VPS54)
Protein phosphatases and associated proteins [BR:
gsh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117357704 (VPS54)
Membrane trafficking [BR:
gsh04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
117357704 (VPS54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
EXOC6_Sec15_N
Motif
Other DBs
NCBI-GeneID:
117357704
NCBI-ProteinID:
XP_033794558
UniProt:
A0A6P8QDL8
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All DBs
Position
3:complement(339748319..340034190)
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AA seq
978 aa
AA seq
DB search
MAASHRSSPVPQMTSSDGFFKKELESAKQVRLVQSLPDVCPKEPTGGSNTLCDSPSVVAD
QHRWTIYHSKVNLPAALNDPRLAKRELDFFTKTWGLDFVETEVMPSFYLPQITKEHFALY
KQETAQREKLHERCKSICPPKDDFDRITHSHSNVDKLRTDLEHVPKIFMKPDFALEDPLT
FSAVLPWSHFSTAGGKGNRDAASSKLLQEKLSHYLDIIEVNIAHQISLRSEAFFHAMTSQ
HELQDYLRKTSQAVKLLRDKIAQIDKVMCKGSLHILRLGLTRNNCVKLYNKLKLMATVHQ
TQPTVQLLLSTSDFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEF
SSYVRSDLNRPLEDGCQILEEERLVSLVFGLLKQRKLNFFEIYGEEMMATAKNIIKQCVV
NTITQIEEIDPEVIVKLADQMRMMNFPQWLDLLQNIFSKFTIFLQRVKATLSLVRGIVLL
VLDKNQKIREPERCSVQKNPGRESDVDTEVAYLTHEGMFISDAFKCELSAVAADSTAQRN
TSPSSEPCGSDSISEPECTTDSSSSKEHTSSSATPGGVEITVSDDMKLTDLELGKLANNI
QELIYTASDICHDRCVKFLMARAKDGFLEKLTSSEFVTLSRLVEAFVLDTEQICGRKSMS
LRGALQSQANRFVNRFHEERKTKLSLLLENERWKQAEVPAEFQDLVDLITNGKIALPEKK
AGAVEDRKPTEFLIVEGQKYAVVGTVLLLMRIILEYCQCVDDIPSITTDMLTRLSDLLKY
FNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPIIRAHFEARLQPKQFSM
LRHFDHITKDYHDHVAEISAKLVAIMDNLFDKLLSKYEVKAPVPSTYFRNICKQMAKMHE
AIFYLLPEEQTQMLFLRINASYKLHLKRQLMHLNVVNDGGPQHGLVAADVAFYVGNIQAL
KGLKDLDLNMGEIWEQKR
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaagccataggtcttccccagtgcctcaaatgaccagcagtgatggtttcttt
aaaaaggagctggagtctgcaaaacaggttcgactggtgcaatcactgccagatgtttgt
cccaaggagcctacagggggctctaatactttatgcgacagcccatctgttgttgcagac
cagcacagatggactatttatcattccaaagttaatctcccagcagcactaaatgaccca
aggttggcaaaaagggaattggatttttttacaaaaacctggggtttggactttgtggag
actgaggttatgccttcattctacctcccgcagattaccaaggagcattttgcattatac
aagcaggaaactgctcagagagaaaagcttcatgaaagatgcaaaagcatttgccctcct
aaggatgactttgataggattacgcattcacacagtaatgtagataaattaaggacagat
ttggagcatgtacctaagatttttatgaaaccagactttgccttggaagatccattaaca
tttagtgcagtcttaccgtggtctcattttagtaccgctggaggaaaagggaatcgtgat
gcagcttcctcaaagttgcttcaagaaaagctgagccattatctggatattattgaagta
aatatagctcatcagatttcactgcgttctgaagcattttttcacgcgatgacctcccag
catgaactgcaggactacctcaggaaaacttcccaagctgtaaaactgcttcgagacaaa
attgcacagattgacaaagtgatgtgcaaaggatctctacacattttaaggctggggctg
accagaaataactgtgttaaattgtacaataaattgaaattaatggctacagtacaccaa
acgcagcctacagtgcagctattgttatccacatctgactttgttggggcactggactta
atagcaacgacccaggaggtactacagcaggagcttcaaggcattcacagtttccggcat
cttggatctcagctctgtgaactggaaaaactgatagataaaatgatgattgcagagttt
tcctcatatgtacgcagtgacttaaatagaccacttgaagacggctgccagattttagaa
gaggaaaggttagtatctctcgtctttggcctattaaaacaaagaaagctcaattttttt
gaaatctatggtgaagagatgatggctacagcaaaaaacatcattaaacagtgtgtggtg
aatactataacccaaatagaagaaatagatcctgaagtaatagttaaacttgcagaccaa
atgcgaatgatgaatttccctcagtggcttgatctactccagaatattttttccaagttt
accatatttcttcaacgagttaaggcaacgttaagtcttgttcgtggcattgttcttttg
gtcttggacaagaaccaaaagatcagggagcctgagagatgttcagtccagaagaatcct
gggagagaaagtgatgtggacacagaagtggcttacttgacacatgaaggcatgttcata
agtgatgcattcaagtgtgagctttctgctgtagctgctgacagcactgctcagagaaac
acctctcccagtagtgagccttgtggcagtgactccatatcagaaccagaatgcactact
gactcttcttcaagcaaagagcacacatcttcctctgccacaccaggaggggtagaaata
acggttagcgatgacatgaagctgactgacttagaactgggaaaacttgctaataacatc
caggagctaatttacactgcatcagacatatgtcatgaccgttgtgtcaaattcctcatg
gcaagagcaaaggatggttttctggagaagttgacctcttctgagtttgttaccctttca
cggttagtggaagcatttgtgctggacactgaacagatttgtggcaggaaaagcatgtca
cttcgtggagcacttcagagccaagccaacagatttgtgaatagattccatgaggagagg
aaaacgaaattaagtcttcttttagaaaatgaacgatggaagcaagctgaagttcctgcg
gagtttcaggatcttgttgatttgataacaaacgggaaaatcgctttacctgagaaaaaa
gcaggagctgttgaagaccgaaagccaaccgaattcctgattgtggaaggacaaaagtat
gctgtagttgggacagtgctactgttgatgcgaataattcttgaatattgccagtgtgtg
gatgatataccttctatcactactgacatgctcactcgcctatcggatttattgaagtac
ttcaactcaagaagttgccagttggttcttggagccggagcattgcaagttgttggtttg
aaaactataactactaaaaatttggctctgtcttcacgttgcttgcagctgatagtacac
tacattcctattatccgagcccactttgaggctcgattgcagcccaagcagttcagcatg
ctccggcactttgatcacattaccaaggattatcatgaccatgtagcagaaatttcagca
aaacttgtagcaataatggataacttatttgacaaacttttatctaagtatgaagtgaaa
gccccagtgccctcaacttactttaggaatatttgtaagcaaatggccaaaatgcatgaa
gctattttttatctgcttccagaagagcaaacacagatgttgtttttaagaattaatgca
agctacaaacttcatttgaaaaggcagctaatgcatctaaatgtagtcaatgatggagga
cctcagcatgggctggttgctgctgatgtagctttctatgttgggaacattcaagctttg
aagggcttaaaggacctggaccttaacatgggtgaaatttgggaacagaagaggtga
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