Geotrypetes seraphini (Gaboon caecilian): 117357795
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Entry
117357795 CDS
T09159
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117357795 (COL2A1)
04518 Integrin signaling
117357795 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117357795 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117357795 (COL2A1)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117357795 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
117357795
NCBI-ProteinID:
XP_033794797
UniProt:
A0A6P8Q4Q3
LinkDB
All DBs
Position
3:complement(194291209..194517715)
Genome browser
AA seq
1491 aa
AA seq
DB search
MVSFVHPRTLVLLAAAQLLSLAVVKSQEGQTRDSVTCMQDGQAYNDKDVWKPRPCQICVC
DTGTVLCDDIACENMKDCPNAEIPFGECCAICPTQQPSTSSGQTGPKGQKGEPGDIKDVV
GPRGPPGPQGPSGEQGPRGERGDKGEKGSPGPRGRDGEPGVPGNPGQPGPPGPPGPPGLG
GNFAAQMTGGFDEKAGGAQLGVMQGPMGPMGPRGSPGPNGSPGPQGFQGSPGEPGEPGTS
GPMGPRGPAGPPGKSGDDGEAGKPGKAGERGPSGPQGARGFPGTPGLPGVKGHRGYSGLD
GIKGETGAAGAKGEAGAPGENGSPGPMGPRGLAGERGRPGPSGAAGARGNDGLSGPAGPP
GPVGPAGSPGFPGAPGSKGEAGPTGARGPEGAQGSRGESGNPGSPGPAGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQQGDPGIAGFKGEQGPKGELGPL
GPQGAPGPAGEEGKRGARGEPGAAGPIGPLGERGAPGNRGFPGQDGLAGPKGAPGERGVP
GLGGPKGGNGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGLSGEDGRPGPPGPQGAR
GQPGVMGFPGPKGASGEAGKAGEKGLPGAPGLRGLSGKDGETGAQGPSGPAGPAGERGEQ
GSPGPSGFQGLPGPPGPPGENGKSGDQGVPGEAGAAGLVGPRGERGFPGERGSPGSQGLQ
GPRGLPGTPGTDGPKGAIGPVGPAGAQGPPGLQGMPGERGAAGISGPKGDRGDTGEKGPE
GAPGKDGTRGLTGPIGPPGPSGPNGEKGESGPPGPGGAVGTRGAPGERGETGPPGPAGFA
GPPGSDGQPGLKGEHGEAGQKGDAGAPGPQGPSGAPGPQGPNGVTGPKGARGAQGPAGAT
GFPGAAGRVGPPGPNGNPGSPGPPGGSGKDGPKGVRGDAGPPGRSGDPGLQGPAGPPGEK
GEPGDDGTSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGTPGSVGER
GPSGPVGPPGLTGPSGEPGREGSSGSDGPPGRDGSPGIKGDRGETGSAGAPGAPGPPGSS
GPVGPTGKQGDRGEAGAQGPMGPAGSAGARGIPGPQGPRGDKGEVGEAGERGQKGHRGFT
GLQGLPGPPGTSGDQGTTGPAGPAGPRGLPGPVGPSGKEGSNGHPGPIGPPGPRGRSGET
GPSGPPGIPGPPGPPGPPGPGIDLSAFAGLSQPEKAPDPMRYMRADQASNSLRQHDVEVD
ATLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPDWKSGNYWIDPNQGCTLDAIKVFCN
METGETCVYPNPAKIPRKNWWTSKTKENKHVWFGETINGGFHFSYGDDSSAPNTANIQMT
FLRLLSMDASQNITYYCKNSVAFMDEASGSLKKALLLQGSNDVEIRAEGNSRFTYTALED
GCKKHTGKWGKTVIEYRTQKTSRLPIIDIAPIDIGGADQEFGVDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atggtcagctttgtgcatccacggacactagtgctgctggcagctgcccagcttctctca
ctggcagttgtcaaatcccaggaaggccagaccagggactcagtgacctgcatgcaggat
gggcaggcttataatgataaagatgtgtggaagcccaggccctgccaaatctgtgtctgt
gacactggaactgtcctttgtgatgacatagcctgcgagaacatgaaagactgcccaaat
gctgagatccccttcggagagtgctgcgccatctgccctacacaacagccttccacttcc
agtggacaaacaggccccaagggacaaaaaggtgaacctggagatattaaagatgtagta
ggacctcgaggacccccaggaccacagggaccatcaggagaacagggaccaagaggcgaa
cgaggcgacaaaggggagaaaggttcacctggacctcgaggcagagatggcgaaccagga
gtcccaggcaaccccggacaacctggcccacctggcccacccggtccacctggccttggc
ggaaactttgctgctcagatgactggaggatttgatgagaaagctggaggtgcccagctg
ggtgtgatgcaaggaccaatgggcccaatgggaccacgaggatcaccaggccccaacggc
tctcctggacctcaaggttttcaaggcagccctggtgaaccaggtgaacctggaacatct
ggtcccatgggtcctcgtggtcctgcaggtcctcctggcaaatctggtgatgatggtgaa
gctggaaaacctggtaaagctggggaacgtggcccttctggtcctcagggtgctcgtggc
tttccaggcacccctggtttaccaggagttaaaggtcacaggggctactcaggtctagat
ggcataaagggtgaaactggtgccgcaggagctaagggtgaagctggtgctcctggtgag
aacggatctcctggtccaatgggtcctcgtggtttggctggggagagaggacgacctgga
ccatctggtgctgctggagcacgtggtaatgatgggctgtctggtcctgctggtccgccc
ggacctgttggccctgctggttctcctggcttccccggtgctcctggctctaagggtgaa
gctggacctactggagctcgtggccctgagggtgctcagggttccaggggggaatctggt
aatcctggctctcccggacctgctggtgcttctggtaaccctggtactgatggaatccct
ggagctaaaggatcggctggtgctcctggcattgctggtgcccctggtttccctggccct
cgtggacctccagggcctcagggtgctactggtcctttgggtcctaaaggccagcaggga
gacccaggtattgctggctttaaaggtgaacaaggccccaaaggtgaacttggtccttta
ggtcctcagggagcaccaggtcccgcaggtgaagaaggcaagagaggagcccggggtgaa
ccaggggctgctgggccaattggtcccctaggagaaagaggtgcacctggtaatcgtggt
ttcccaggtcaggatggccttgcagggcccaaaggtgctccaggagaacgtggtgtgcca
ggacttggtggtccaaagggtggcaatggggaccctggccgtcctggagaacctggtctt
cccggtgctagaggtctcactggccgtcctggtgatgctggtcctcaaggcaaagttggt
ccttctggcttatctggtgaagatggccgtccgggaccacccggcccacagggtgctcgg
ggacagcctggtgtcatgggattcccaggtcccaaaggtgccagtggtgaagctgggaaa
gcgggtgagaaggggttaccaggagctcccggtctgagaggtctttctggaaaagatggt
gagactggcgcacagggtccatcaggaccagctggaccagctggtgagagaggtgagcaa
ggatcccctggaccttctggtttccagggacttcctggtcctccaggtcctccaggagaa
aatggtaaatcaggtgaccagggtgttcctggtgaagctggtgctgcaggtctggttggt
ccaaggggagagcgtggtttccctggtgagcgtggttctcctggttctcagggtctccaa
ggtcctcgtgggctgcctggcacacctggcacagatggtcctaaaggtgccattggccca
gttggacctgctggtgcccagggaccccctggcttgcagggaatgcctggtgagcgtgga
gctgctggaatttctgggcccaaaggagacaggggagatactggtgagaaaggcccagaa
ggtgctcctggtaaagacggcactagaggtctgactggtcccataggtcctcctggccca
tcaggtcctaatggtgaaaagggtgaatctggtccccctggacctggtggtgctgtgggc
acccgtggagcccctggtgaacgtggtgagactggtcctcctggcccagctggctttgct
ggtcctcctggatctgatggacagcctgggcttaaaggtgaacatggcgaggcaggtcag
aagggagatgctggtgctccaggacctcagggtccatccggggctcctggtccacagggt
ccaaatggtgttactggtcctaagggagcccgaggagctcagggccctgctggagctact
ggattccctggtgctgcaggaagagtcggtccaccaggtcctaatggaaaccctggctca
cctggtccacctggtggttctggcaaagatggtcccaagggagttcgtggtgatgctgga
cctcctggccgctctggggaccctggtctacagggacctgcagggccccctggtgaaaag
ggtgaacctggagatgatggtacttctggtcccgatggacctccgggtcctcaaggtttg
gcaggccagcgtggtattgtgggtctgccagggcaacgtggtgagagaggcttccctggt
cttcctggcccatctggggagcctgggaaacaaggcactccaggatctgtaggtgagcgt
ggcccttctggccctgtcggcccacctggtttgactggtccatctggtgaacctggacgt
gagggtagctcgggttctgatggtcctcctggacgtgatggttctcctggtattaagggt
gaccgtggtgagactggttctgctggtgcacctggagctcctggcccacctggatcttct
ggtcctgttggtcctactggcaagcaaggagaccgtggtgaagctggagctcaaggtcca
atgggcccagcaggttctgctggggctcgaggcataccagggcctcaaggacctcgtggt
gataagggagaagttggtgaagctggtgaacgaggtcagaagggtcacagaggtttcact
ggactccaaggtctgcctggcccacctggtacctctggtgatcaaggtacaactgggcct
gctggtcctgccggtccaagaggtctcccaggtcctgttggcccttctggtaaagaaggc
tctaatggtcaccctggtcctattggtcctcctggtccccgtggtcgtagtggtgaaact
ggcccctctggccctcctggtatacctgggcctcctggtccccctggtcctccaggtcct
ggcattgacctgtctgcctttgctggcttgtctcaacctgagaaagcccctgatcctatg
cgctacatgcgtgctgaccaagcctccaatagccttcgccagcatgatgtagaggtcgat
gccactttgaaatccctcaacaaccaaattgagagcattcgaagccctgaaggtagcaag
aagaaccccgctcgcacctgccgtgacctgaagctgtgccatcctgattggaagagtggc
aattattggattgatcctaatcaaggatgcaccttggatgccatcaaggtattctgtaac
atggaaactggtgaaacatgtgtctatccaaacccagccaaaatacccaggaagaactgg
tggaccagcaagaccaaggaaaataaacatgtctggtttggggagacaattaatggaggc
ttccatttcagctatggtgatgacagctctgcacccaacacggctaacatccagatgacc
ttcctacgcctgttgtccatggacgcctctcagaacatcacatactactgtaaaaacagt
gttgccttcatggatgaagcctcgggcagtctgaagaaggctctcttgttacagggatcc
aatgatgtagagatcagagcagagggcaatagccgatttacgtacactgccttggaagat
ggctgcaagaaacacactggcaaatggggtaagacagtgattgaataccgaacacagaag
acatcacgcctgcctatcattgacattgctcctatagatattggtggagctgaccaggaa
tttggcgttgacattggcccagtctgctttttataa
DBGET
integrated database retrieval system
