Geotrypetes seraphini (Gaboon caecilian): 117357963
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Entry
117357963 CDS
T09159
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117357963 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117357963 (CDC40)
Spliceosome [BR:
gsh03041
]
Complex C
Other components
Step II factors
117357963 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_RFWD3
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
117357963
NCBI-ProteinID:
XP_033795148
UniProt:
A0A6P8R4Z8
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Position
3:complement(5853864..5969436)
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AA seq
563 aa
AA seq
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MEALVSYGSGSGSNSESEAEAGPGEGVAAVRSLLRIAVDSTPEVAVKEDVETGTHLDPSL
KEVNYNPTYDTMFAPEFGPVNPFRTQQMAAPRNMLSGYAEPTHINDFMFEQQRRTFATYG
YALDPSLDSPQSVSKYIGSVKKAEKFKGRTVFESGRKKSKKREKMKGTDASNIEGFLGPW
AKYVDEKDVAKPSEEEQKELDEITAKRQKKGRHEEEKPADEKTILHVKDMYDYQGRSYLH
IPQDIGTNLRSTEPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLW
EVYQERRCLRTFIGHNKAVRDVCFNNAGTQFLSAAYDRYLKLWDTETGQCITKFTNRKVP
YCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTITFVDENRRFVST
SDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRL
NKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTKLYSRLKAHDKVCIGA
VWHPHETSKVITCGWDGLIKLWD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgctggtttcgtacggcagcggctcgggctcgaactcggagtcggaggcagag
gcgggtcccggcgaaggggttgcggcggtccggagccttctgcgcatcgccgtcgactcc
accccggaggtggcggtgaaggaagatgtggagacagggactcatctggacccatcgctt
aaggaggtgaactacaatcccacctacgacaccatgtttgcaccagagtttgggccagtg
aatccattccgaacacagcagatggcagctcccaggaacatgttgtcaggatacgctgag
cccacgcacatcaacgactttatgtttgagcagcagagacgaaccttcgccacctacggt
tatgccctggatccatccttagacagcccacaaagtgtgagcaaatacattggctctgta
aaaaaggctgaaaagtttaaaggtcggacagtgtttgaatctgggaggaagaaatctaag
aagagggaaaaaatgaaggggacggatgcatccaatatcgaaggcttcctggggccctgg
gcaaaatatgtggatgagaaggacgtggccaagccttctgaggaagagcagaaagagttg
gatgaaattaccgcaaagagacaaaagaagggcagacatgaagaggagaagcctgccgat
gaaaagaccatcttgcatgttaaagatatgtatgattatcaaggccgatcttacctgcac
attcctcaagatattggtaccaacctacgctccacagaaccacctgagaaatgttatctt
cccaagaaacagattcatgtgtggtctgggcatacaaagggtgttagcgctgtccggttg
tttcctctttctggtcatttactgctgtcctgctccatggattgcaagatcaagctttgg
gaagtatatcaggagcggaggtgtttgagaacatttataggacacaataaggctgtgcga
gacgtctgtttcaataacgctgggactcagtttcttagtgcagcatatgatcggtacctg
aaactctgggacactgaaacaggtcagtgtattacgaagttcacaaaccgaaaggtacca
tattgcgtcaaattcaacccagatgaagataaacagaatctctttgtggcaggaatgtct
gataagaaaattgtacaatgggacattcgaagtggggaaatagttcaggagtatgatagg
cacctgggagctgtcaatactatcacttttgtggatgagaacagacgatttgtcagtacg
tcagatgacaagagtctgagggtctgggaatgggacattcctgtggattttaaatacata
gcagagccaagtatgcactcaatgcctgctgttactttatctccaaatgggaagtggttg
gcctgccagtccatggacaatcaaattctgatatttggggcacaaaacagattccgacta
aacaaaaagaaaatctttaagggtcacatggtggcagggtatgcctgtcaagtggacttc
tcgccagacatgagctacgtggtatcgggtgatgcagatggaaaactgaatatctgggac
tggaaaacgaccaaactgtacagcagattgaaagcccacgataaggtgtgcattggagca
gtctggcacccacatgagacatccaaggtgatcacgtgtggttgggatggacttatcaag
ctgtgggactga
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