Geotrypetes seraphini (Gaboon caecilian): 117358274
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Entry
117358274 CDS
T09159
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117358274 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117358274 (MSH6)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117358274 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
STI1-HOP_DP
Motif
Other DBs
NCBI-GeneID:
117358274
NCBI-ProteinID:
XP_033795890
UniProt:
A0A6P8QJ60
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Position
3:complement(381111109..381190027)
Genome browser
AA seq
1359 aa
AA seq
DB search
MSKQSSLFSFFTKSPALSSGTRRTSASPLQGDVPPGVKGAEGSAPQEGAKQQTPSRGPFS
ASGAKAGKKAKAGGAGAAVAPPSISCDFTPGDLVWARMTGYPWWPCLVYNHPKEGTHLRR
KDKSLLVHVHFFDDSPTRGWIGVKYLKAYTGSDHKDARKGGVFYNSRPEIQNAMKMADEA
IRKTKVQRLELAVCNEPSEEEEEEEQMEVEKSLSLSDTGHSESDEEIKTNKRQAYESRSA
RKAKKRRARPESDSDAEGSDDEFKPDTKDNKSSDEASSGADEAEVSEVDTGSDPESPVKF
PSKRKRGSFGTPAANKRLQNELSYTPKRAVSVSNETKSKLSTFSAPEPFESQSVLGNGGG
TGATVWDHERLEWLQDGKRKDAKRRKQDDSDYDPSTLYVPEDFLNKCTPGMRRWWKLKSQ
NLDAVIFYKVGKFYELYHMDAVIAVNELGLIFMKGSWAHSGFPEISFGRYSDVLVQKGFK
VARVEQTETVEMMEARCKSVAHPTKFDKVVRREVCRIITKGTQTYSILDGSPSESHSKYL
LCIKEKVEDSSGQHRVYGICFVDTSVGRFHVGQFLDDRHCSRLRTLVAHHPPVQILFEKG
NLSVDTKKILKGCLASAIQESLLPGSQFWDASKTLKVLIEESYFEDIKNGESSGTLPPVI
KHMVCESDALGLTPSENGELSLSALGACVYYLKKCLIDQELLSMGNFEEYIPVDIDLAKS
KDVNTYFAKTSQRMVLDGVTLANLEILQNGTNGSVEGTLLERLDTCLTPFGKRLLKQWLC
APLCNPHSIGDRLNAVDDIMAIPDKVSEVSELLKKLPDLERLLCKIHSIGSPLKSKNHPD
SRAVLYEETIYSKKKIADFLSALEGFKVMQEVIRIIENDVGDFQSKVLKQIVTLKTKNSC
GHFPDLSSELRRWDIAFDHEKARKTGVITPKVGFDSDYDQALQDIKSNEQSLQEYLGKQR
TRLGCKSIVYWGTGKNRCQLEIPENVTERNLPEEYELRSTKKGFKRYWTKAIERMLSDLT
TAEERRDAALKDCMRRLFYNFDKNYKDWQTAVECFAVLDVLICLARYSQGGDGPVCRPLI
VLPDGTTPFLELRSSHHPCITKTFFGDDFIPNDILIGCEDENKESNNGASCVLVTGPNMG
GKSTLMRQAGLLVIMAQMGCYVPADTCRLTPVDRVFTRLGASDRIMSGESTFFVELSETS
SILHHATEHSLVLLDELGRGTATFDGTAIASAVVKELSENTRCRTLFSTHYHSLVEDYAH
SPAVRLGHMACMVENECEDPSQETITFLYKFIKGTCPKSYGFNAARLANIPEDVIQNGHK
KAREFEKITLSLRIFREICLVAEDPTPALHKLLPLLSAL
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcagagcagcctctttagcttcttcaccaagtccccggcgctctccagcggc
acccgccgcacctccgcctccccgctccagggagatgtgccgcccggggtcaagggggcg
gaaggctcggccccccaggagggagccaagcagcagacccccagccgaggcccgttctcc
gcctcgggggcaaaggcgggcaagaaggcgaaggcggggggagcgggagccgccgtcgcc
ccccccagcatctcttgtgattttacccctggagatttagtctgggccaggatgacaggt
tacccttggtggccatgccttgtatacaaccatccaaaagaaggaacacatctccggaga
aaggacaaatcccttctggtccatgtgcatttttttgatgacagcccaacaaggggttgg
attggtgtcaaatatttaaaagcttatacaggctcggatcataaggatgccaggaagggt
ggtgtgttttataatagcaggcctgaaatccagaatgcaatgaaaatggcagatgaagct
atacgcaaaaccaaagtccagagactggagctagcagtgtgcaatgagccctcggaggag
gaggaggaagaggagcagatggaggtggagaagagcctttctttgagcgacactggccac
agtgaaagtgacgaggagatcaaaacaaataagagacaagcttatgagagcaggagtgcc
agaaaagccaagaaacggagagctagaccggaatctgacagtgatgctgaaggttcagat
gatgaattcaaaccagacactaaagataataagagcagcgatgaggccagcagtggagcg
gatgaagcagaagtatcagaggtggacactggatcagatccagaaagtccagtcaaattt
ccatctaaacggaagagagggagctttggcacccctgcagcaaataagcggttacaaaat
gaactctcatatacacctaagagggcagtgagtgtgtccaatgaaacaaaatccaagttg
tcaaccttctctgctcctgaaccatttgagtcccagtcagttttgggtaatggagggggc
actggagctactgtttgggaccatgaaagacttgaatggcttcaagatgggaaaagaaaa
gatgcaaagaggagaaagcaagacgattctgactatgatccatctaccctctatgttcca
gaggatttcctcaataagtgtaccccaggaatgcgacgatggtggaagttgaaatctcag
aaccttgatgcagttatcttctataaagttggaaaattttatgagttgtatcacatggat
gctgtcattgctgtaaacgagctggggttgatattcatgaaaggctcttgggctcattct
ggtttcccggagatttcatttggacggtactctgatgtcctagttcagaaagggttcaaa
gtagccagggttgaacagacggaaactgttgagatgatggaggcacgttgtaaatctgtg
gcacatcccacaaaatttgacaaggtggtgcgaagagaagtgtgcaggataattactaaa
ggaacacagacttatagtattctggatggcagcccttcagaaagtcatagcaaatattta
ctgtgcatcaaggagaaagtggaggactcttctggccagcatcgtgtgtatggcatttgt
tttgttgacacatctgtggggagattccatgtgggtcaatttctggatgaccggcattgc
tcaaggttaaggaccctggtggcacatcaccctccagtgcagatcttgtttgagaaagga
aacctctccgtagatacaaaaaagatcctgaaaggctgccttgcatctgctatacaagag
agcttacttcctggctcccagttctgggatgcatccaaaacactaaaagttctcattgaa
gagagctactttgaggatatcaagaatggagaaagtagtggcacactgcctccagtgatc
aaacacatggtgtgtgaaagtgatgcacttggtctcactcctagtgaaaacggtgaactc
tcactttcagcgctgggtgcatgtgtgtattatctcaagaaatgccttattgaccaggaa
ctgttgtcaatgggaaattttgaggagtatattcctgtggatattgatttagcaaaatct
aaagatgtgaacacttattttgctaaaaccagtcagcgaatggtgctagatggtgtgaca
ctggctaatctggaaatcttacagaatgggacaaatggttctgttgaaggcactttgctg
gaaaggctcgacacttgtctgactccctttgggaaacgccttttgaagcaatggttatgt
gcacctctctgtaatcctcattctattggtgatcgtctaaatgcagttgacgatatcatg
gctatacctgacaaagtctctgaggtcagtgaacttctaaaaaagctaccagatcttgag
aggctactttgcaaaatccacagtattggttctccactgaagagcaagaatcacccagat
agcagggctgtcttgtatgaggaaacaatttacagcaaaaagaagattgccgacttcctg
tctgcactggagggatttaaagtaatgcaagaggttattaggattatagaaaatgatgtt
ggtgactttcaatctaaagtactgaagcagatagtaactctaaagactaaaaattcatgt
ggacactttcctgatctttccagtgaacttagaaggtgggatatagcttttgaccatgaa
aaagctcgtaaaactggggttatcactcccaaagttgggtttgattcagattacgatcaa
gcactacaggacatcaaaagcaatgaacagagccttcaggaatatctgggaaagcagcgc
acacgacttgggtgcaaaagtatagtatactggggaactgggaaaaatcgttgtcagttg
gagatccccgaaaatgtaacggagcgtaatttgccagaagaatatgaactgaggtcgact
aaaaagggctttaagcgatattggactaaagcaattgagaggatgctgagtgatttaacc
actgctgaagagcgaagggatgcagcactaaaagactgtatgagaagactgttctacaac
tttgacaaaaattacaaagactggcaaactgcggtggaatgctttgctgtgctagatgtt
ctgatctgtctagctcgctacagtcagggaggtgatggaccagtgtgccggcctctcatt
gtgttgccagatggtaccaccccattcctagaactcagaagttctcatcatccttgcatc
acaaagaccttttttggtgatgattttataccgaatgacattttgattggctgtgaggat
gaaaacaaagaaagcaataatggagcttcctgcgtgctggtcacgggcccaaatatgggg
gggaaatccaccctcatgagacaggctggtcttttggtgatcatggcccagatgggttgc
tatgttcctgccgacacctgcaggctgactccagttgacagagtgtttacaagactaggt
gcttcagacagaatcatgtccggtgagagcaccttttttgttgagctaagtgagacttca
agtattctccatcatgcaacagaacattctctcgtacttctggacgagctaggtagaggc
acagctacgtttgatggaacagccatagccagtgcagtggttaaagaactttctgaaaat
acaaggtgtcgcacactgttttccactcactaccattccttggttgaggactacgcacac
agccctgcagtacgattgggccatatggcctgcatggttgaaaatgagtgtgaagatcca
agtcaggaaactattacctttctgtataagtttatcaaaggtacatgcccgaaaagctat
ggctttaatgcagccaggcttgcaaacattcctgaagatgtcattcagaatggtcacaag
aaagctagggaatttgagaagatcactctgtccctgagaatatttagggaaatctgtttg
gtagcagaggatccaactccagctcttcacaaactgctccctctgcttagtgctttgtaa
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