Geotrypetes seraphini (Gaboon caecilian): 117358786
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Entry
117358786 CDS
T09159
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117358786 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117358786 (SF3B3)
03041 Spliceosome [BR:
gsh03041
]
117358786 (SF3B3)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117358786 (SF3B3)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117358786 (SF3B3)
Spliceosome [BR:
gsh03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117358786 (SF3B3)
Complex B
117358786 (SF3B3)
Complex C
U2 SnRNP specific factors
117358786 (SF3B3)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117358786 (SF3B3)
TFTC complex
117358786 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
117358786
NCBI-ProteinID:
XP_033796334
UniProt:
A0A6P8QI31
LinkDB
All DBs
Position
4:172367209..172674745
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGISYAIHGNFSGTKLQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMVFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRLLKNLVLVDEQDSLSPILSCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKIIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLASVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPEALCIVEMGGVEKRDDLGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYAYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSFP
LQYTPRKFVVHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGNGQWASVVRVMNPIQGNTLDLVQLEQNEAAFSVAVCKFSNSG
DDWHVLVGVAKDLILNPRSVAGGFIYTYKLVNAGEKLEFLHKTTVEEVPAAIAPFQGRIL
VGVGKLLRVYDLGKKKLLRKCENKHLANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTACLLDYETVAGADKFGNICVVRLPPNINDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcttatacaacattactttacaaagagccactggcatcagctatgctattcatggc
aacttttcaggaacaaaactgcaggaaattgttgtgtcccgaggaaaaatcctggaattg
ctacgaccggatgccaacacaggcaaggtgcataccttgctgacagtggaagtgtttggt
attattcgctccctcatggccttcaggttgacaggtggcacaaaggattacattgtggtg
ggaagtgattcaggcaggattgttattctagagtatcatccttccaagaatatgtttgaa
aagattcatcaggaaacctttggcaaaagtggctgtcgtagaattgttcctgggcagttc
ttggctgtggatcccaagggcagagctgtcatgattagtgcaattgagaagcagaagctg
gtgtatattctgaacagagatgctgcagctcgtctgaccatttcttccccgcttgaagct
cacaaagccaataccctggtctaccatgtggtgggagttgacgtgggttttgaaaatccc
atgttcgcctgtctagagatggattatgaggaagcagacaacgatccaacaggtgaagca
gctgctaatacccagcagaccctaacattttatgagttggacttgggcctgaaccatgtc
gtcaggaaatatagtgagcctctagaggagcatgggaacttccttataacagtcccagga
ggttctgatggccccagtggagtgctgatatgttcagaaaactatatcacttacaaaaac
tttggtgaccagcctgatatcagatgtcccattcctaggagaaggaatgatctggatgac
cctgaaagaggaatggtgtttgtgtgctctgctacccataagaccaagtccatgttcttc
tttctggcccagactgaacaaggagacatctttaaaatcaccttggagactgatgaggat
atggtgacagaaattcgactgaaatattttgacacagttccagtagctgcagctatgtgt
gtgttgaaaacaggattcctctttgttgcttcagagtttggaaatcattatctgtatcag
attgctcaccttggagatgatgatgaggagccagagttctcatctgccatgcctctggag
gaaggagatacattctttttccagccacgactgctcaaaaacctggtgcttgtggatgag
caggacagtctgtccccaatattgagctgtcagattgctgatttggccaatgaagataca
ccccagctatatgtggcatgtggtaggggacctcggtcttctctacgagtcctaaggcat
ggacttgaggtatctgaaatggctgtgtcagagctgcctggtaatcccaatgccgtatgg
acagtaagaaggcacatagaagatgagtatgatgcttatatcattgtttctttcgtgaat
gccactctggtgctctccattggagagactgtagaggaagtaacagactctggcttcttg
ggtaccactcctactttgtcctgctctttgctgggggaagatgctttggtacaggtatat
ccagatggtatcagacacatccgtgcagacaaaagagtgaatgaatggaagactccaggg
aagaagattattgtgaagtgtgctgtgaaccagcgacaggtggtgattgcgttaacgggg
ggagagctggtctattttgaaatggacccgtcaggccaattgaatgagtacacagagcgg
aaagagatgtctgcagatgtggtatgcatgagcctggcaagtgttcctcccggagaacag
cgttctcgtttcctcgctgtgggactggtagacaacactgtccgaataatttcactggac
ccatcggattgcttgcaaccactgagtatgcaggcactaccagctcagcctgaggcactg
tgtattgtggagatgggtggcgtggagaaacgagatgatctgggggagaggggctctatt
ggtttcctgtatctcaacattggactccagaatggagtcttgctgcgaacagtccttgat
ccagttaccggggatctatctgataccagaacacgatacttgggctcacggccagtgaag
ctctttagggttcgaatgcaaggccaagaagcagtgctggctatgtcaagccgctcatgg
ctgagctatgcctatcagtctcgatttcatctgacacccctctcctatgagactctagag
tttgcatcaggcttcgcttcagagcaatgtcctgagggtattgtggccatttccacaaac
actctgaggattctggcattggagaaattgggtgctgtgttcaatcaggtgtcctttcct
ctgcagtacacacccagaaagtttgtcgtccaccccgaaagcaataatttgatcatcatt
gagactgatcacaatgcttacactgaggccaccaaggcgcaacgaaaacagcaaatggca
gaggaaatggtggaagcagcaggagaggatgagagggagctggctgcagaaatggctgct
gcctttctaaatgaaaaccttccagaggctatctttggtgctccaaaggcggggaacggt
cagtgggcctctgtagttcgagtgatgaaccccatccaaggaaacactctggacctggtg
cagctagagcaaaatgaagcggctttcagcgtggcagtgtgcaagtttagcaattctggt
gatgactggcatgtgctggtcggcgtagctaaggacctgatcctgaacccccgctctgtt
gctggtggcttcatctatacttacaaattggtgaatgctggtgagaaacttgaattccta
cataagacaacagtggaggaagtgcctgctgccatcgcccccttccagggtcgcattctt
gttggagtgggtaagctgctgcgtgtctatgatctgggaaagaagaagctgctcaggaaa
tgtgaaaataagcacctggccaattatatctcagggatacaaaccattggtcatcgtgta
attgtgtctgatgtccaagaaagtttcatctgggttcgttacaagaggaatgagaaccag
cttatcatctttgctgatgatacttatccacgttgggtcaccactgcctgcctccttgac
tatgagaccgtggctggcgctgacaagtttggcaacatctgtgtggtaaggttaccaccc
aacatcaacgatgaggtggatgaagatccaacagggaacaaagcattgtgggacagagga
cttctcaatggagcctcacagaaggcagaggtgatcatgaattatcacgtgggagaaaca
gtattgtccttacagaaaaccactttgattccagggggctctgaatccttggtgtacaca
accttgtcaggaggcattggcattctggttcccttcacatcacatgaggatcatgacttc
ttccagcatgtggagatgcatctacgttcagagcaccctcctctctgtggccgggaccat
ctaagcttccgctcttactattttccagtcaagaatgtgattgatggggacctctgtgaa
cagtttaactctatggagcccaacaaacagaagaatgtggctgaggagttggacaggacg
ccacccgaagtctccaaaaaattggaagacatacgtacacgctatgctttctaa
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integrated database retrieval system
