Geotrypetes seraphini (Gaboon caecilian): 117358882
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Entry
117358882 CDS
T09159
Name
(RefSeq) DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03420
Nucleotide excision repair
gsh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117358882
09124 Replication and repair
03420 Nucleotide excision repair
117358882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsh04121
]
117358882
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117358882
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117358882
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
117358882
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
WDR90_beta-prop_4th
ANAPC4_WD40
WD_LRWD1
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
117358882
NCBI-ProteinID:
XP_033796589
UniProt:
A0A6P8R8E4
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Position
1:161625576..161759081
Genome browser
AA seq
399 aa
AA seq
DB search
MLGFLSSRQLGLDDALRLRRAERTRRVLSLELNKDRDVERIHGSGVNTLDIEPVEGRYML
SGGSDGVIVLYDLANLSRKPCYTCKAVCTVGKSHPDVHKFSVETVQWYPHDTGIFTSSSF
DKTLKIWDTNTLQPADVFHFEGTVYSHHMSPVATKHCLIAVGSKSHKVQLCDLKSGSCSH
ILQGHRGEVLAVSWSPRQEYILATASADSRVKLWDVRRASSCLITLDQHNGEKSKISSEI
ANTAHNGRVNGLCFTADGLHFLTVGTDDRMRLWNSSSGENTLVNYGKVCNESRKGLKFTV
SDRCSTDFVFVPFDSTIAVYTLHAGELITKLRGHYSDVDCCVFQSNFQELYSGSKDCNIL
AWVPAVRDLDPDEGSEKSGPQSHLNPAFQDAWSSSDEEG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgttgggctttctttcatctcgccagcttggtttagatgacgcacttcgactcagacga
gcagagcgtacaagaagggtgctaagcttagagctcaataaagacagagatgttgaaaga
atccatggcagtggtgttaataccctcgatatcgaacccgttgagggaaggtacatgctg
tcaggagggtctgacggggttattgtgctctatgaccttgccaacctcagcagaaagcca
tgttacacttgtaaagcagtttgcaccgtaggcaagagtcatcctgatgttcacaaattt
agtgtggagacagttcagtggtatccccatgacactggtattttcacgtcaagttctttt
gataagacgctgaaaatatgggacacaaatacattacaacctgcagatgtgtttcatttt
gaaggcacagtctacagccatcacatgtctcctgttgctaccaagcactgcttaatagca
gttggtagcaagagccacaaagtgcagctttgtgatctgaaatccggatcctgttctcac
attttgcaaggccacagaggtgaagtgcttgcagtgtcttggtctccacgccaagaatac
atcctggcaacagcaagcgctgatagtagagtgaaactgtgggatgtgcgaagagcatcc
agctgtctaattacgcttgatcagcacaatggtgaaaagtccaagatatcttctgaaata
gcaaacacggctcataatggaagagttaatggcttatgttttacagctgatggtttgcac
tttctaacagtgggtactgatgatcgcatgaggctctggaacagctccagtggggaaaac
actctggtaaactatgggaaagtgtgtaatgagagtagaaagggccttaagttcaccgta
tctgacaggtgtagtacagattttgtctttgtaccttttgacagcaccattgcggtttat
actcttcatgcaggagagttgataaccaagctcagaggacattatagcgatgttgactgc
tgtgtatttcagtctaatttccaggagctttatagtggcagcaaagactgcaatattctt
gcttgggtaccagctgtgagagacctagatccggatgagggttctgaaaagtcaggacca
cagtctcatttgaatccagcatttcaagatgcatggagtagcagtgatgaagaaggatga
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