Geotrypetes seraphini (Gaboon caecilian): 117358975
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Entry
117358975 CDS
T09159
Symbol
CTCF
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117358975 (CTCF)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117358975 (CTCF)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117358975 (CTCF)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117358975 (CTCF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
Actin_micro
zf-C2H2_6
zf-C2H2_15
DUF1442
zf-WIZ
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
117358975
NCBI-ProteinID:
XP_033796878
UniProt:
A0A6P8R8W4
LinkDB
All DBs
Position
4:167566608..167902649
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AA seq
730 aa
AA seq
DB search
MEADTVEAIVEESETFMKVKERKTYQRRREGGQDDDLQQNQTDGCEVSHDVNSSVQMVMM
EQLDTTLLQMKTEVMEGVVPHEVDPTVDDTQIITLQVVNMEEQPINLGELQLVQVPVPVA
VPVATTVGELHAAYENEVSKQVLQDGEPMICHTLPLPEGFQVVKVGANGEVETLEQAELQ
TQEDTSWQKDPDYQPPIKKIKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSDVNAEK
VVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFR
TVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVS
KLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKM
HILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALIQ
HQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDMHFKR
YHDPNFVPAAFVCSKCGKTFTRRNTMARHSENCTGPDGTDGENGGEGQEPSTKKSKRGRK
RKMRSKKEDSSDSEENAEPDLDDNEDEEETAVEIEPEPEVQMVNLVPPPAKKRRGRPPGK
TNQPKQNQPAAIIQVEDQNTGAIENIIVEVKKEPETETVEGVVEQVQATAPVEAPNGDLT
PEMILSMMDR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgacacggtagaagctattgtagaagaatctgaaacatttatgaaagtaaaa
gagcgaaaaacctatcagaggcggcgtgaaggaggccaggatgatgacttgcaacagaac
cagacagatggctgtgaagtgtcccatgatgttaacagcagtgtccaaatggttatgatg
gagcagctagatacaacacttcttcaaatgaagacagaagtaatggaaggcgtagttccc
catgaagtcgatccaactgtggatgatacacagataataacattacaggttgtcaatatg
gaagagcagcctataaatcttggagaactgcaacttgttcaagttcctgtgccagtggca
gtacctgtagcaactactgtaggagaacttcatgcagcctatgaaaatgaagtttccaaa
caggtacttcaggatggagagcccatgatctgtcataccttacctttgccagaaggcttc
caggtagtaaaagtaggagccaatggtgaagtggaaacattagaacaagctgaacttcag
acacaggaagacacaagctggcaaaaagatccagactatcagccaccaatcaaaaagata
aagaaaacaaaaaaaagtaaattacgttatacagaggaaggaaaagatgtggatgtgtct
gtgtatgattttgaagaagaacagcaggaagggttgctttcagatgttaatgcagaaaag
gtggttggtaacatgaagcctccaaaaccaactaaaattaaaaagaaaggtgtgaagaag
acattccagtgtgagctctgcagttacacatgtccacggcgttctaacttggatcgtcac
atgaagagccatactgacgaaaggccacacaaatgccatttatgtggtagagctttcagg
acagtcacattgctgagaaaccatctgaatactcatacaggtactcgtcctcacaagtgt
cctgactgtgacatggcctttgtgaccagtggagagttggttcggcatcgtcgttacaag
cacactcatgaaaaaccttttaagtgttcaatgtgcgactacgccagtgtggaggtcagc
aagttgaaacgccacattcgctctcacacaggggagcgtccgttccagtgcagtctgtgc
agctatgccagcagagatacctataagctgaagagacacatgcggacccactctggtgaa
aaaccatatgaatgttatatctgccatgctcggtttacccagagtgggacaatgaagatg
cacattctgcagaaacacacagagaacgtggcaaagtttcattgtcctcactgcgacaca
gtgatagcaagaaaaagtgatttaggtgtccatttaagaaaacaacattcctacattgag
cagggcaagaagtgtcgttattgtgatgcagtattccacgagcgttatgccctaattcag
catcagaagtctcacaagaatgagaagcgtttcaagtgtgaccagtgtgattatgcctgt
agacaggaacggcacatgatcatgcacaagcgtacccatactggagaaaagccttatgcc
tgcagccattgtgataaaactttccgccagaaacaactgcttgatatgcacttcaaacgc
taccatgaccccaactttgtccccgctgcctttgtttgttccaagtgtgggaagacattt
actcgcaggaataccatggctagacactctgagaactgtactggtcctgatggcacagat
ggagagaatggaggcgaaggacaggaaccatcaaccaagaagagcaaacgtgggcgaaag
agaaagatgcgctccaagaaagaggattcctcagatagtgaagaaaatgctgagcctgac
ctggacgataatgaagatgaggaggagacagcagtagaaattgaacctgagccagaggtg
cagatggttaatcttgtaccacctccagcaaagaagcggagaggaaggccacctggcaaa
actaaccagccaaagcagaaccaaccagcagcaatcattcaggtggaagaccagaacact
ggtgccattgaaaacatcattgtggaagtaaagaaagagcctgaaacagaaactgtagaa
ggagtagtagagcaggtgcaggcaacagcaccagtcgaagctcctaatggagacctaact
ccagagatgattctcagcatgatggaccggtga
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