Geotrypetes seraphini (Gaboon caecilian): 117359250
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Entry
117359250 CDS
T09159
Symbol
VPS35
Name
(RefSeq) vacuolar protein sorting-associated protein 35 isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117359250 (VPS35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117359250 (VPS35)
Membrane trafficking [BR:
gsh04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
117359250 (VPS35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Imm5
KH_GLD-3_1st
FerA
Motif
Other DBs
NCBI-GeneID:
117359250
NCBI-ProteinID:
XP_033797572
UniProt:
A0A6P8QET5
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Position
4:complement(48536739..48705847)
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AA seq
825 aa
AA seq
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MGRRAELWAGGHMIAGSSRATGARSGAVTMPTTQQSPQDEQEKLLDEAIQAVKVQSFQMK
RCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKV
ADLYELVQYAGNIIPRLYLLITVGVVYVKSFSQSRKDILKDLVEMCRGVQHPLRGLFLRN
YLLQCTRNILPDEGEQTDEEVTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDKEKRER
ERQELRILVGTNLVRLSQLEGVNVERYKQIVLPGILEQVVNCRDALAQEYLMECIIQVFP
DEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQ
VATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATS
SAVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSSALDYNTEI
VSQEQVDAIMNLVSTLIQDQPDQPAEDPDPEDFADEQSLVGRFIHLLQSDDPDQQYLILN
TARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISAL
IKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEIGDSKAQLAAITLI
IGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQCRAVSTCAHLFWSGRNTDKNGEEIH
SGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYVYFYEKENDAVTIQVLNQLIQKIR
EDLPNLESSEETEQINKHFHNTLEHLRLRRESPESDGPIYEGLVL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggagggcggagctgtgggcgggtggtcacatgattgcgggaagctcccgggct
actggtgctcgtagcggcgcggtgaccatgcctacaacacagcagtctcctcaggatgag
caagaaaagctcttggatgaagccattcaggcggtgaaggtccagtcatttcagatgaag
cgatgcttggacaaaaacaagctgatggatgctttgaaacatgcttccaatatgctcggt
gagctccggacatccatgttgtctccaaagagctactatgaactttacatggctatttct
gatgagctgcactatctggaagtatacctgacggatgaatttgccaaaggaaggaaagtg
gctgatctttatgagcttgtacagtatgctggaaatatcattccaaggctctacttgctt
ataacagttggtgtagtttatgtaaagtcattttcccagtccaggaaagatatattgaag
gatttagtggaaatgtgccgtggtgtccagcatcctttaaggggtctttttcttcgaaac
tatcttcttcaatgcacacgaaatattttgccagatgaaggcgagcaaacagatgaagaa
gtaacaggtgacatcagtgattccatggactttgtgctgctaaactttgctgaaatgaac
aaactgtgggtgagaatgcaacaccaaggccacagcagagacaaagaaaaaagggagcgg
gagaggcaagaactgagaatcttagttggaaccaatttagtgcgtctcagtcagctagaa
ggcgtcaatgtggaaagatataaacagattgtgttgcctggtattttggaacaagttgta
aactgcagggatgctttggctcaggaatatctcatggagtgtattatacaggtgttccca
gatgaatttcaccttcagacactgaatcctttcctgcgggcctgtgctgagttacatcaa
aatgtgaacgtgaagaatataatcattgctttaattgatagattagctttatttgcacat
cgtgaagatggacctggaatcccagcagatattaagctttttgacattttttcacagcag
gtagctactgttatacagtctagacaagatatgccttctgaagatgtagtgtctttacaa
gtgtcacttataaacctggccatgaagtgttatcctgatcgagtagattatgttgataaa
gtgcttgagacaactgtagagatcttcaataagcttaaccttgaacatattgctacaagc
agcgctgtttcaaaggaactgacaagactgttaaagatccctgttgatacctacaacaac
atcttgactgttctgaagcttaaacatttccatcccctctttgagtattttgactatgag
tccaggaagagcatgagctgctatgttcttagcagtgcactggactacaacactgagatt
gtgtctcaggaacaggttgatgccattatgaacttggtgtcgacgctgattcaagaccag
cctgaccagcccgctgaagaccctgatccagaggactttgctgatgagcagagccttgtg
ggaagatttattcaccttttgcaatcagacgatcctgaccaacagtatttgattctaaac
acagctcggaaacattttggagcaggtggaaaccagcggattcgtttcacgttacctccc
ttagtatttgcagcgtatcaacttgccttccggtataaggagaattctaaagtggatgat
aagtgggaaaagaagtgccagaaaatcttttcatttgcacatcagactatcagcgctttg
ataaaagcagaattggcagaattacctttacggctcttcctccaaggagcccttgcagct
ggagaaattggatttgagaatcatgagactgtagcatatgaatttatgtcccaggcattt
tctttgtacgaagatgaaatcggcgattcaaaagcacagctggcagcaattacgctgata
attggaacatttgagagaatgaagtgtttcagtgaggagaaccatgagcctttgaggact
caatgtgcactggctgcatcaaagcttcttaaaaagcctgaccagtgccgagctgtgagc
acctgtgcccatctgttttggtctgggcgaaatactgataagaacggagaggagattcat
agtggcaagcgagttatggaatgcttgaagaaagctctaaagatagcaaatcagtgcatg
gacccttcactgcaagttcagcttttcatagaaattctgaatagatatgtctacttttat
gaaaaggaaaatgacgcggttacaattcaagttttgaatcaacttatacaaaagatccga
gaagaccttcccaacctagagtccagtgaagaaacagaacaaattaacaagcatttccat
aacacactggaacatttgcgtttaaggagagaatcgccagaatcggacgggccaatttat
gaaggtcttgtcctttga
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