Geotrypetes seraphini (Gaboon caecilian): 117359268
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Entry
117359268 CDS
T09159
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117359268 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117359268 (TAF5)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117359268 (TAF5)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117359268 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
117359268 (TAF5)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117359268 (TAF5)
STAGA complex
117359268 (TAF5)
TFTC complex
117359268 (TAF5)
SAGA complex
117359268 (TAF5)
SLIK complex
117359268 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
PEP5_VPS11_N
eIF2A
WD40_like
CDK5RAP3
VPS8_N
RAB3GAP2_N
Beta-prop_ELP1_1st
LisH
VID27
LisH_TPL
PROPPIN
Motif
Other DBs
NCBI-GeneID:
117359268
NCBI-ProteinID:
XP_033797629
UniProt:
A0A6P8QL76
LinkDB
All DBs
Position
4:295690770..295773228
Genome browser
AA seq
800 aa
AA seq
DB search
MRPPLSQRRKMAALPEEANEAESAPDLELKVEIKVESENLENEAAEEKSVSNVSNTNTNN
HSGGHANNGGGGCSAGNGGCNSQPPPPPPAATTPAPQPALPECQDRQTLLAVLQFLRKNN
LKESEEILRREAGFSKCTEDSLSPGGESEGPEAILLSRVAAGGGAGAAAAAVSSAAAATP
APAASKVPAVIAEDQPDVSAVLSAYTQQGDPAKYEEYYSGLKRFIECVLDCHRAELSQLF
YPLFVHMYLELVYNHHENEAKAFFEKFHGDQECYYQDDLRVLACLTKQEHMKGNETMLDF
RTSKFVLRISRDSYQLLKRHLQERQNNQIWSIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
GEAKREANKAKVFFGLLKEPEIELPPDDEDEEAENEEGKPKKKKPKKDSMGSKSKKQDPH
APPQNRIPLPELKDSDKLDKIMNMKEATKRVRLGPDCLPSICFYTFLNAYQGLTAVDMTD
DSSLLAGGFADSTVRVWTVTPKKLRSVKAASDLGLIDKESDDVLERIMDEKTASESKILH
GHSGPVYGTSFSPDRNYLLSSAEDGTIRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
VSGGHDRVARLWATDHYQPLRIFAGHLADVMCTRFHPNSNYIATGSSDRTVRLWDVLNGN
CVRIFTGHKGPIHSLTFSPNGKFLATGATDGRVLLWDIGHGLMIGELKAHTNTVYALKFS
RDGEILASGSMDNTVRLWDAVKVFEDLETDDFTAATGHVNLPENSQDYLLGTYMTKSTPV
THLHFTRRNLLLAAGAYVPQ
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcccccgctgtcgcaaagacgaaagatggcggcgctgcccgaggaggcgaacgaa
gcggagagtgcaccagacttggagctgaaggtggaaatcaaggtggagagcgaaaatctt
gaaaacgaagcagcagaagaaaaaagcgtcagtaacgtcagtaacactaacaccaataac
cacagcggcggccatgctaataacgggggtggtggctgcagcgcagggaacggcggctgc
aactctcagccgccgccgccgcccccggctgctacgactcccgccccccagccggccctg
cccgagtgccaggaccgtcagacgctgctggccgtgctgcagttcctgcggaagaataac
ctgaaggagtccgaggagatcctgcgcagggaggccggcttttccaagtgcaccgaagac
tctctgagccccggtggggagtcggaaggccccgaggcgattctgctgagccgggtggca
gcgggtgggggggccggggctgccgccgctgccgtttcttctgccgccgccgccactcca
gctcctgctgcgagcaaagtgcctgctgtcattgctgaggaccagccagatgtgagtgcc
gtgctatctgcctacactcagcagggggaccctgcaaaatatgaggagtactacagtgga
ctgaagcgctttattgaatgtgtgctggattgccatcgggccgaattatctcaactgttt
tatcctctctttgtacacatgtatttggagttggtctataatcaccatgagaacgaagcc
aaggcattttttgaaaaatttcatggtgatcaagagtgctactatcaagatgacctgagg
gtgcttgcttgccttacaaaacaggagcatatgaagggtaatgagacaatgttggacttc
cggacaagcaaatttgtactgcggatttctcgcgactcttaccagcttctgaagaggcac
ctccaagagcggcagaataatcagatctggagcattgtgcaggagcacctctatatagac
atctttgatggaatgcctcgcagcaagcaacagatagatgccatggtgggaagcttggcc
ggagaggcaaagcgggaagcgaataaagccaaggttttctttggcttattgaaagagcca
gaaatcgagttgcctccagatgatgaagatgaagaagcggaaaatgaagaagggaaacca
aagaaaaagaaacctaaaaaagacagcatgggctcaaaaagcaagaagcaagatcctcat
gcacctccacaaaacaggatcccactaccagagctgaaggactctgataagctggacaaa
ataatgaacatgaaggaagccacaaaacgggtgcgcttaggcccagactgcttgccttcc
atctgtttctacacattcctcaatgcttaccagggcttgactgcagtggacatgacagat
gattccagcctgctggcaggtggttttgcagattctactgttagagtttggactgtgact
cccaagaagctgcgcagtgtgaaagcagcttcagatctcggcctcatagataaagaatca
gatgatgttttagagaggatcatggatgagaagacagcaagcgagtcgaagattcttcat
gggcacagcggccccgtctatggaaccagctttagtcctgatagaaactatttgttgtcc
agtgcagaggatggcaccattagattgtggagcctgcagaccttcacttgtctagtaggt
tataaaggacacaattaccctgtgtgggacacacaattttctccctatggatattatttt
gtatctggaggtcatgacagagttgcacgtttgtgggctacagaccattaccagcctttg
cggatttttgctggccatcttgctgatgtcatgtgtacgcggttccaccccaattcaaac
tatattgctacaggatcatcagacaggactgtcagactctgggatgttctgaatggcaat
tgtgttagaatcttcactgggcataagggaccaattcactctttgacattttctcccaat
gggaaattcctcgctactggagcaaccgatggcagagttcttctctgggatattggacat
ggtttgatgattggagagctgaaagctcacacaaatacagtttatgccctgaagttcagt
agagacggggaaattttagcatctggttcgatggataacacggtgcgcttatgggatgct
gtaaaagtgtttgaagacttagagacagatgactttacagcagccactggccatgtaaac
ctacctgagaactcccaggactacctgctggggacctacatgaccaagtccacacctgtc
acacacctgcacttcacccgcagaaacttgctcctggctgcaggtgcatatgtaccccag
taa
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