Geotrypetes seraphini (Gaboon caecilian): 117359357
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Entry
117359357 CDS
T09159
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117359357
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117359357
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117359357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
DUF2730
Motif
Other DBs
NCBI-GeneID:
117359357
NCBI-ProteinID:
XP_033797874
UniProt:
A0A6P8QLT5
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All DBs
Position
1:complement(177245058..177499803)
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AA seq
1858 aa
AA seq
DB search
MANREDYCLARDPGESKLKLPLLPVGGELSRAGPTAAALSTSPISHPCTVPSARLLHPCL
GSSALSPQNIMASGVLDSWEDYLCTDSENEESEISAQSSRAETLLEGNQEEETDKTFNEI
SSVEADEAEVQSDLEDDSEIYETCVDSPKFQNPETKASFGFLKRMYNFIVAEFTKAKFSS
LLNDYVESEFFLIDGDSLLITQVLEKTLRKGQTLHFFYLVERFLFNLTEKGAKYIIVFFK
DAECFYYTCPNLLSLRTAFIFHLQQNTDIEVHSEFTNCLAPEWQRFLKERHPYFLIIDDT
GLNHLQTCFLNVFIHHALGQKISVVLISGQRSDVLRVYGYLIQSKYYHIRIFQKNKEKIK
HAIQTLIQHEEKYNSLPDQLNLSNIQKEMHQIINQLKQLWPEGSDIRRILCVVTCSLILK
MYSKGAKNSEASEIPDEGHSTSGIHQENNEPLTLQEVADLCRMRCLSIIFLSFLPLSQRA
RSKIVESYWNKRVSTFLKMQHIYTHLALKILDDDIDWKVDLTYLPDFSDNQLWKNIAHYY
ETEACLGLGLGKIIEREYQDLWNTISKLANNCDVGEPFPLRITSKPFLETEQVPLKVPEK
KIPNTGLIPINSELVEEYAGDVLKDLLLSSDHSTLASMVQPKEFDELLHWHSKKPLSDDY
DRTKCNYEGRITDPKKLKEKQKLQRFQHFYGQTLEGNISKTIVTQVDKPLKSEVHDKKSK
SSSKKKAVIIEINQKYQKAKEDQKQLEKWNGLSESIKKEIKENYISGIKRLDDFLRTCSS
NSVKLFAEMAGLDTCFEVWLQHCKSQDKKSRNTDIAVQVMVRIHILLEKFQDLLQKDHLE
RIAKCLKYFGFENLAHTLDTAQITESEREKFSNYVLDIGAARFQLQHMGHYLFRDERKDS
DLRVQHFIPDTWQRELLDAVDNNESAVIVAPTSSGKTYASYYCMEKILRESNEGIVVYVA
PTKALVNQVVATVFSRFSKSLPDGLSLCGVFTRDYRTDALNSQILVTVPQCLEILLLAPH
RQQWVKRIKYVIFDEVHCLGGEIGAEVWEHLLVMIRCPFLALSATISNPDHLKEWLQSVK
RYWQNADNTIGNDYVLANRKSAKNPKGQRDEKYSYKVRLIIYGERYNDLEKYICSLKRGD
FIFEHYHPCAALTVNHIEKYGIPKDLTCSPRESIQLYDSMLKIWPGWPRAKELEPEEFRC
FKNKIIIKKHHARKYEEELKKELTNWISCGQKKKADLLLQHLKPYHAGCSDEDMQKKVPL
FVEKLKEMNKLPALLFIFNLHSVETIPNNILLFLREKQKSKQKQNIDKEKWHLTNKLQKV
EKALKTSLPSKGKLSASKTERNIFRASEKEELDKKLKKCNEIPPDCTYGNCKSVNDELMQ
KILKRLPNTKKGEEIRKLVESGIGYHHGPLFQKGRQVVEMLFRMGYLGVVSATSSLALGI
NMPCKSVVFMEDSLYLDALNYRQMSGRAGRRGQDMIGNVFFYDIPLPKVEKLIKANVPEL
KGQFPFRITLVLQLMLLAAKADDKEDAKAKVMSILKHSLLSFKRPKTEEMLKLYFLFSCQ
FLIQEGYLNQEGIPVGFAGLVSHLHYHEPGNFVLVSFLVKGLFHKLCQPIKSGSKVFSES
VMETLVLILANIFGINYFPASFYEKRKYIHFYQSKVFLEDLPRDFAAAVEEYNSKIKDIF
GGFLLTVSKLAYMEEEFKLPLSRTDFADKECDDSEIVGHLFSCSKQRTAVSPFACLSGIV
DQDLLDIHTINNAILQTVGVNVNDIPLLHIKRYDTRGRKMRLNAYALDFYKHGCLQALTQ
DNGMNEGDAFYLLKDFLLLIKTVSISLGELCENENDNVLLAFQQLSKSYEEKLKLSEN
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacagagaagattattgtttagcgcgtgatcccggggaatcgaaacttaagctg
ccgctcttgccagtgggaggggagctgagccgagctggtccaactgctgctgctttgagc
acgagccccatctcccatccctgcactgtgccgtcggctcgccttttgcacccctgcttg
gggtccagcgcgctctctccgcagaacattatggcttctggagtacttgattcatgggaa
gattacctgtgcacagattctgagaatgaagaaagtgagatctcagctcaaagttcaagg
gctgaaaccttgcttgaaggaaatcaagaggaagaaacagataaaacatttaatgagatt
tccagcgttgaagctgatgaagcagaggtacagagtgatttagaagatgattctgaaatt
tatgagacatgcgtggacagtcctaagttccaaaatccagaaacaaaggcaagctttgga
tttctgaagagaatgtataatttcattgtggctgaatttacaaaagctaaattttccagt
ttactcaatgactatgttgagtctgaattttttctgattgatggagattctttgctaatc
acacaagttttggaaaagacgctgaggaaaggacagactctgcatttcttttacttagtg
gagcgctttctatttaatttgactgaaaaaggagcaaaatatataattgttttcttcaag
gatgctgaatgtttttactacacatgtcccaatctcctttctcttcgtactgcattcatt
ttccatcttcaacaaaacactgatattgaggttcacagtgaatttaccaactgtttggca
ccagaatggcagaggttcctgaaagaaaggcatccctattttttaattattgatgacaca
ggattgaatcatcttcaaacttgttttttaaatgtatttatacatcatgctctggggcag
aaaatcagtgtagttctcatctcaggacaaagatcagatgtcttaagagtatatggatat
cttattcagtctaaatactaccacattagaatatttcagaagaataaggagaaaataaaa
catgccatccaaacattgatccagcatgaggaaaaatataattctttgcctgaccagttg
aatttaagcaacattcaaaaagagatgcaccagattataaaccagcttaagcaattgtgg
ccagaaggatccgacatcaggcgaattctctgtgttgtaacatgctcattgattctgaag
atgtacagcaagggggcaaaaaattcagaagcctctgaaattcctgatgaaggacactca
acaagtgggattcaccaggaaaataatgaaccattaacactacaagaagtggctgatctt
tgcagaatgcgttgcctcagcatcatttttctttcatttttgccactttcacaacgtgct
cgatccaagatcgtggaatcctactggaataagcgagtgtctacatttttgaaaatgcaa
catatatatacacatctggctctgaaaatattggatgatgatattgattggaaagtggat
ttaacatacctgcctgacttcagtgataatcaactatggaaaaatattgcacattactat
gaaacagaagcctgcttaggtttagggctggggaaaataattgaaagagaatatcaagat
ctgtggaacactatatcgaaactagccaacaattgtgatgttggggaacctttccctctg
cgaattacatcaaaacctttccttgaaacagaacaggttccacttaaagttcctgaaaag
aagattcctaatacaggcttaatcccaataaattctgagttggtagaagagtatgctgga
gatgtcttgaaagatctgcttttaagtagtgatcattcaacactggcttcaatggtgcaa
ccaaaagaatttgatgaacttttacattggcattctaaaaagcctcttagtgatgactat
gacagaacaaaatgtaattatgaagggaggataactgatcctaagaaactcaaagaaaaa
cagaagttgcaacgctttcaacacttttatggacaaaccctggaaggcaacatttcaaag
acaattgtaacccaagtggataagccattaaaatctgaagtgcatgacaaaaagagtaaa
tcttcaagtaaaaagaaagccgttattattgaaattaaccagaagtatcagaaagccaaa
gaggaccaaaagcaattagaaaaatggaatggattgtcagaatcaattaagaaggagatt
aaagagaattatatttctggaataaaaagactggatgattttctcagaacctgttccagt
aattctgttaagttgtttgcagagatggcaggtctagatacctgctttgaagtgtggcta
cagcattgcaagagtcaagacaaaaaatcaagaaacacagatattgctgttcaagtgatg
gtgagaatccatattctgctggaaaaatttcaggatctattgcagaaggaccatttagaa
aggatagcaaaatgtcttaaatattttggctttgagaatttggcccacactttagatact
gctcagataacagaaagtgagagagaaaagttctccaattatgtgctcgatataggagca
gctcgatttcagctacagcatatgggccattacttgtttagagatgagagaaaggattca
gaccttcgagtacagcatttcataccagacacctggcagagagaacttcttgatgctgtt
gacaacaatgaatccgcagtaattgttgccccaacttcatctggaaaaacctatgcatct
tattactgcatggagaaaattttgagagaaagcaatgaaggaatagttgtatatgttgcc
cctacaaaggcactggtaaaccaagtggttgctacagtattcagtcggtttagtaaatca
ttaccagatgggttgtcattgtgtggagtttttacaagagattatcgtactgatgccctg
aactctcagatattagtgacagtgccacagtgcttagagatcctcctactagctcctcat
cgtcagcagtgggttaaacgcatcaaatatgtgatatttgatgaagtccattgtcttgga
ggagaaattggagcagaggtttgggagcatcttttagtgatgatccgatgcccttttctt
gcactttctgcaactataagtaacccagatcatcttaaagagtggctgcagtcagtaaaa
aggtattggcagaatgctgataacacaataggcaatgattatgtactagctaacaggaaa
tcggcaaaaaatcctaaaggacagagggacgagaaatactcttacaaagttaggctgatt
atctatggagaaagatacaatgatctggaaaagtatatttgctcactgaagagaggtgat
ttcatctttgaacactatcatccatgtgctgcgttaactgtcaatcatattgagaaatat
ggcattccaaaagatcttacctgttctccacgagaaagcatccagctttatgacagtatg
ctaaaaatctggccaggatggcccagagccaaggaactggaacctgaggagttcagatgt
ttcaagaacaaaataataatcaagaagcatcatgcaagaaaatatgaagaggagctcaag
aaagaattaacaaactggatctcatgtggtcagaaaaagaaggctgatctgctgctgcaa
caccttaaaccttatcatgccggctgttctgatgaagatatgcagaaaaaagttccactt
tttgttgaaaagctgaaggaaatgaacaaattgccagcattgttgtttatattcaacctt
cattctgtagaaaccataccaaataatatactattgtttctgagagagaaacaaaaaagc
aaacagaaacaaaatattgacaaagaaaaatggcacttaacaaataagctacaaaaagtg
gaaaaggccctgaaaactagtctgccttctaaaggaaaactgtctgcaagcaaaacagaa
cgtaacattttcagagcttctgaaaaggaagaattagacaaaaagcttaaaaaatgcaat
gaaattccaccagactgcacttatggaaattgcaaatctgtgaatgatgagcttatgcag
aaaatcctgaaacgacttccgaatacaaaaaaaggcgaggaaatacgaaaactggtagag
tcaggaattggataccatcatggccccttgtttcagaaaggaagacaggttgtggagatg
ctgttcaggatgggatacttaggggtggtatcagctacaagttcacttgctttaggaatc
aatatgccctgtaaatcagtagttttcatggaggattccctctacttggatgctctgaac
tatagacagatgtctggacgtgctggaagacgtggccaggatatgattggaaacgtgttt
ttctatgatattccactgcccaaggtggaaaagctcattaaagcaaatgttcctgaactg
aaaggccaattcccttttagaataactttagtgctgcaacttatgttactggctgcaaaa
gcagatgataaagaggatgccaaggcaaaggtcatgtctatactgaagcactcattgttg
tctttcaagcggcctaagacagaagaaatgctaaaactttactttttattttcttgtcag
tttttaattcaagagggctatctgaatcaagaaggtatcccagtgggatttgctggactt
gtaagccatttgcattatcatgaacctggaaattttgttctggtcagctttctagtgaaa
ggcttattccacaagttatgtcagccaatcaagagtggttcaaaggttttttctgaaagt
gttatggaaacactagtcttaatactggcaaacatatttggaatcaattattttccagca
agcttttatgaaaaaaggaaatacattcatttttaccagtcaaaggtgtttcttgaagat
ctcccaagagattttgctgctgctgtagaggagtataacagcaaaataaaagatatcttt
ggcggcttccttctaactgtttccaaattggcatatatggaagaagaattcaagcttcca
ctgtccagaactgattttgcagataaggagtgtgatgactctgaaatagttggacacctg
tttagttgcagtaagcagagaactgctgtctcaccttttgcctgcctgtctggaattgtg
gatcaagacttgttggacatccatactattaacaatgctatactacaaacagttggagtg
aatgtcaatgatattcctctccttcatatcaagagatatgatactcgaggcagaaaaatg
agactcaatgcttatgctctcgacttctacaaacatggctgcttgcaagcattgacacaa
gacaatgggatgaatgaaggagatgctttctacctgctcaaagattttttgctccttatt
aaaactgtcagcatttctttaggtgaactgtgtgagaatgagaatgacaatgttctgctg
gcatttcaacagctgagtaaaagttatgaagagaaactaaaattgtctgaaaattaa
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integrated database retrieval system
