Geotrypetes seraphini (Gaboon caecilian): 117360011
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Entry
117360011 CDS
T09159
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117360011 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117360011
NCBI-ProteinID:
XP_033799432
UniProt:
A0A6P8QLL3
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Position
4:complement(297666298..297870883)
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AA seq
1433 aa
AA seq
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MDSVTKKGIRDGLISTGRETVITTRLTSLPPKGRNSSGAKVSSQSRGSGMEKKVLSHGSS
YVTSSSSRLQVGSLGSKRAPSPSSTLSVSPGSTFDRKTYTSVTRHAAYEGSSSGNSSPEY
TRKEFASSSTRGRTQSRESEIRVRLQSASPSGRWTELEEVKRLVKGGRSSSLSPTRSPSN
TLPIPKKATVETKIVTEGSQSASGTYDTTILNAALPSYMWTSTLPAGSALNGYHNNMAHS
SSLINANTQSTGSVFGVPNNLAPSNPMLNSGLNTSSTMFGVQNNLVPSSGLISSSTVTAS
SAAYGIKKNVPQSTHNTGVLSSTISTSAANTGTTRSDDLLTKDYKFLLLEKENTAPKKES
ELLIMTKDSGKVFTASTTGISTSLCEDTFKKDKQIIMSNGDSYLKSEANGGLKVTKEKAT
YAEIHKDDGGGGMGAAPAWCPCGSCCSWWKWLLGLLLAWLLLLGLLFGLIALAEEVKALK
SRVAQLETLSQTNRLTSMNIDGLDLSKSERIQDMKHRTEVTSLNLGSDTQTRENLWLYIR
EKMRTERELGYFKGERGEPGHKGDMGIQGSKGDRGLPGPPGPQGLIGHTGSEGPKGQKGS
TGDIGMEGPMGQRGREGPPGPRGEPGPSGFGEKGDRGPAGEAGLPGSPGIPGSVGLKGNQ
GPAGSPGATGSPGLQGFRGEAGLPGPKGDKGATGTSGPKGDQGDKGSRGLTGEPGARGLA
GPAGEAGTKGSAGPPGPDGRQGPRGETGIVGLPGPRGPPGLAGDAGIAGLPGLQGSQGLQ
GEPGRTGSKGDSGSPGRVINAEGLSSYALPGPPGPPGPIGPQGSPGIPGPVGPAGLPGQP
GQKGAHGEAGEVVYERRIESSRADKIGDAQAQEGHVEAQAGPPGPPGPPGPPGPRGIAGE
GRQGPPGPPGLPGSFVPTSETFFAGPPGPPGPRGPKGDQGEPGRPGFQGEPGQPGLPGTP
GREGQVVIGPMGPPGNPGLQGPQGERGEAGVPGAPGIPGAVRGSGSSSGSSSGSSSGSSV
ISSSSSWTQGPPGPPGPPGPPGSAGRSSQEIQQFIAEYLQSIGYGSGLTRAQGPPGASGA
YDEILVLLQREDVRQYLIGPPGPPGPPGGGSVSLDYSELASRLMTYMSNSGISIGVPGPP
GPPGLPGSTYGDITALLQASEFRGIIGQPGPPGHPGRPGPPGPVGPPGHLSGNQAGFGVE
EMAAYLERAGYIGGIPGPPGPPGPPGPSGNSGLVSYAENIQSDRFRTELIEYLTSDSVRG
YISGPPGPPGPQGPPGQKGDSGILSSSSSLSSSSRSSSSSLSSSSLSSLDYSEISSRVVE
NIQNQGLLHDITYTVQGIPGLPGPPGPSGRPGISRVFAAYGNVTEDLMDFFRVYGTIPGP
PGIPGQKGERGFPGPKGEIGLQGFQGPQGPRGQKGQKGEQFILNRRKRRSTGL
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgtaaccaaaaagggcattcgagacggtttgatcagcactggaagagagact
gtaatcacaacaagattgacatcgttaccaccaaaaggaagaaacagcagtggggccaag
gtatcatcacagagtagagggagtggaatggaaaagaaggttttgagtcatggaagcagc
tatgtcacaagtagcagttcgagattgcaagtagggtccttgggctcaaagcgggctcca
tctcccagctctacgctctccgtttcacctggctcaacatttgacaggaagacctatacc
tccgttacccgccatgcggcctatgaaggaagctccagtggaaattcttctccagaatac
acgagaaaagaatttgcatcttcctccaccagggggcggactcagagtagagagagtgaa
atccgggtccggctgcagagcgcttctccctccggaagatggacagaactcgaagaagtg
aaacgtttagtgaagggaggccggtcttccagcctcagccctactcgatccccatcgaac
actctccccatccccaagaaagccactgtggaaaccaagatagtaacagagggctcgcag
tcagcatcaggaacttatgatacaaccatattgaatgctgcgcttccctcctacatgtgg
acgtccaccctacctgctgggtccgccctcaatggctaccacaacaacatggcccatagt
tcatctctaataaatgcaaacactcagtcaacgggttcagtgtttggcgttccgaacaac
ctggctcccagcaaccctatgctgaactccgggctcaacacatcctctacaatgtttggc
gttcagaacaaccttgttccaagctctggtctcatcagcagcagtacagtcacagcctca
tctgcagcctatggaattaagaagaatgttcctcagagcacccacaacactggggtcctc
agcagcaccatatccacctcagccgctaacactgggaccacccgcagtgacgacctcctg
acaaaggattacaagttcctgctgctggagaaggagaataccgcacctaagaaggagtca
gaactcctgatcatgaccaaggacagtgggaaggtcttcacagcatccaccaccggaatc
agcacttcgctgtgtgaagatacctttaagaaagacaagcagataatcatgagtaacgga
gattcctatctgaagtcggaggcaaatggtggtctaaaagtcacaaaggagaaagctact
tatgcagaaatccataaagatgacggaggaggaggaatgggtgcagctccggcttggtgt
ccttgtggttcctgctgcagctggtggaaatggctcttaggtttgctcttggcctggttg
ctgcttctcggcctgctctttggactcatcgctttagcggaggaggtgaaggcactgaaa
tctcgtgtggcacaattggaaaccctgagtcaaaccaatcgattaacctctatgaatatt
gatggcttagacctttcaaagtcagaacgcatacaggacatgaaacaccgaacagaagtc
acgagcttgaatctgggttctgacactcagacacgagagaacctgtggctgtacatccga
gagaaaatgcgaacagagagagagctaggatatttcaagggagagaggggcgagcctgga
cacaaaggtgatatgggcatacagggttctaaaggagatcgtggcctcccaggaccacca
gggcctcaagggcttattggacacaccggatcagaaggacccaagggacaaaagggcagt
actggtgacattggtatggagggacccatgggacagagaggacgagaaggtccacctggg
cctcgaggtgaacctggaccatcaggatttggcgagaagggagacagaggtccagcagga
gaagcaggtcttccagggtcaccgggtataccaggctcggtgggtctcaaaggtaaccag
gggcctgctggatcaccaggtgcaacaggtagtccaggccttcaaggtttcagaggtgag
gcgggtcttccaggtcctaaaggcgataagggagctacgggaacatcaggacctaaaggt
gaccagggagacaaaggttctcggggtctcacaggggagccgggtgcccgaggattagct
ggacctgctggagaggcagggaccaaaggctcagcaggtccacctggaccagatggacgc
cagggtccaagaggagaaacaggaattgtgggattacctggacccagaggcccacctggc
ctcgcaggggatgcaggaatagccgggcttccgggactacaaggatctcaagggcttcag
ggtgagccagggcgaacagggtcaaaaggcgatagtggatctccaggcagggttatcaat
gcagagggcttgtcatcttatgctcttcctggccctcctggtccaccaggaccgattggc
cctcaaggttcaccaggcattccaggtcctgttgggccagctggactcccgggacagcca
ggtcaaaaaggagcacatggtgaggcaggagaagttgtgtatgagaggaggatagaatcg
tcacgagcagacaaaattggtgatgcacaagctcaagagggacacgtggaagcacaggca
ggacccccagggcccccaggtcctccaggtccaccaggcccacgaggaatagcaggggaa
ggcagacagggaccaccaggaccaccaggcctgccgggatcttttgtgcccacttcagaa
accttctttgctggacccccaggtcctcctggaccacgtggccctaagggcgatcaaggt
gaaccagggcgaccaggattccaaggtgaacctggacagccaggcctcccaggaacccca
gggcgtgaaggtcaagtagtaattggacccatggggccccctggcaatccaggccttcaa
ggaccacaaggagaaagaggcgaagcaggtgttccaggggctcccggcatcccaggagca
gtacgaggttcagggtcaagttcaggatcaagttcaggttcaagttcaggctccagtgtc
atttcaagttcaagttcctggacccagggacccccaggtcctcctggcccccctggtcca
cctggatctgccggacgtagttcccaggaaatccagcagttcattgccgagtatcttcag
tctatagggtatggttctggtttgacgagggcacaaggtcctccaggagcctcaggagct
tatgatgaaatcctggtacttctgcaaagagaagatgttcgtcagtatctcatcggtcct
cctggtccaccagggccccctggaggtggctctgtctccctggattactccgagctggct
agccgacttatgacctacatgagcaattctgggattagtattggtgtccctggtccacct
ggtcctcctggactgcctggatcaacgtatggtgatataacagctctgctccaagcttct
gaatttagaggaattattgggcaaccaggacctccagggcatcccgggcgcccgggaccc
ccaggacctgtcgggccacctggacatttgagtggaaatcaagctggtttcggtgtggag
gaaatggctgcctacctagaacgtgcaggttatattggaggaatcccagggccacctgga
cccccaggacctccaggaccatctggcaactctggtctggtctcctatgctgaaaatatc
caaagtgatcgattcaggactgagctgattgaatatctgacaagtgacagtgtccgaggg
tacatttcaggaccccctggacctccagggcctcaaggaccaccaggccaaaaaggagat
agtggaattttgtcatcttcgtcatcactgtcatcctcatcacggtcatcctcatcctcg
ttatcatcttcatcgctttcatcactggattacagtgagatatcgagccgggtggttgaa
aacatacagaatcaagggctgcttcatgacattacttacactgtgcaaggaattccaggc
ttacctggacctccagggccttctgggagacctggaatcagcagagtatttgcagcatac
ggaaatgttaccgaggatctcatggactttttcagagtttatggcacaattccaggcccc
cctggtatcccaggtcagaaaggagagagaggattccctggtcccaaaggtgagattgga
cttcaaggttttcaaggacctcaagggccaaggggtcagaaaggacagaaaggtgaacaa
ttcatcctcaacagacggaaaagaagaagtacaggcttatga
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