Geotrypetes seraphini (Gaboon caecilian): 117360060
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Entry
117360060 CDS
T09159
Symbol
TRUB1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gsh03016
]
117360060 (TRUB1)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
117360060 (TRUB1)
Transfer RNA biogenesis [BR:
gsh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
117360060 (TRUB1)
Prokaryotic type
117360060 (TRUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DMA
Motif
Other DBs
NCBI-GeneID:
117360060
NCBI-ProteinID:
XP_033799561
UniProt:
A0A6P8RET1
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All DBs
Position
4:313275429..313315132
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AA seq
286 aa
AA seq
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MAGGVLGDCSAGKAAKLFSLSGLFPVYKPKGPTSADVLNRLKERLLAEAGMKQHGMKRKK
QVLKIGHGGTLDSAASGVLVVGIGKGTKMLSRMLTGSKRYTAVGELGKVTDTLDAMGKIT
EEKPYGHITKADLEGILQKFTGNILQVPPLYSALKKGGQRLSSLVMKGKVVDAKPARPVK
VYGLWITAFQPPLFTLDVECGGGFYVRSLVSDIGRELSSCAYVKELTRTKQGPFTLKDHA
LREECWTIDGVSQALEDSMQLLPVEPEDGAPKDHEANQDVASSDEE
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgtcctgggcgattgtagcgccgggaaggcggcgaagcttttctccctg
agcggcctcttccccgtttacaagcccaaaggccccacctcggccgacgtgttgaaccgg
ctgaaggagaggctgctggcagaagctggaatgaagcagcatgggatgaaaaggaagaag
caggttctgaaaattggacatggaggcactttagacagtgctgcatctggagttttggtg
gtcggcatcggtaagggaaccaaaatgctgagcagaatgctgacagggtccaagaggtac
acagccgttggagagttgggaaaggtgacggacaccctggatgcgatggggaagattact
gaggaaaagccctatggtcacataacgaaggcggatctggaaggaattctacagaagttc
actggcaacattcttcaggtccctccgctctactcggctctgaagaagggcgggcagaga
ctttctagtttggtaatgaaagggaaagtggtggacgccaaaccggcacggccagtaaag
gtgtatggtctgtggattacggccttccagccgccactcttcacgctggatgtggagtgt
ggcggtggcttctacgtacgcagcctggtgagcgacatcggcagagagctctcttcctgt
gcctacgtgaaggagttgacccgaactaagcagggcccctttaccctgaaggatcacgcc
ctgcgggaggagtgctggactattgatggtgtgtcgcaagctctggaagacagcatgcag
cttctccctgtggagccagaagacggtgcaccaaaggaccacgaggcaaaccaggacgtg
gccagcagtgacgaggagtga
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