Geotrypetes seraphini (Gaboon caecilian): 117360449
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Entry
117360449 CDS
T09159
Symbol
PRPF40A
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117360449 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117360449 (PRPF40A)
Spliceosome [BR:
gsh03041
]
Complex A
U1 snRNP components
U1 related factors
117360449 (PRPF40A)
Complex B
117360449 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
117360449
NCBI-ProteinID:
XP_033800094
UniProt:
A0A6P8QS99
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All DBs
Position
5:220220620..220456232
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AA seq
959 aa
AA seq
DB search
MRLPLVGWSQGRPGPGEDRAIMSAPDGANGPSQPAHFTNGPRMLRPAYMTHPVIPHYPPM
GIPPMGQRPPNLAPVSHGMMPQMMPPMSGPPMGQLPGMHPSVMSGLMMPHIPQGPIQPAV
PAGVSNMDAPVGATAGAQATHPPVSGPQPGTSSNSTSEEHHKQKSLWTEHKSPDGRTYFY
NIETKQSTWEKPDELKTPTEQLLSKCPWKEFKSDSGKSYYYNSQTKESRWAKPKELEDLE
AIIKAEENSKQEDSSPAPSAPPAAAQETPSTVVAPATPAPAAPAPVPAAVAAPAIATATA
ATTTAAPVATETDLAVADSAVSAVENESTGTVTSEEQEQSAVPTVPEIDAEASNSATEEP
SKQELSVDSPKEEKENSKPVKKTYTWNTKEEAKQAFKELLKEKRVPSTASWEQAMKMVIN
DPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESYQRFLENHDKMTSTTRYK
KAEQMFGETEVWNAISERDRLEIYEDVLFFLAKKEKEQAKQLRKRNWEALKNILDNMANV
TYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKGILRER
RRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFSNMLGQPGSTALDLFKFY
VEDLKARYHDEKKIIKDILRDKGFVVEINTTFEDFVMVISSTKRATTLDAGNIKLAFNSL
LEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIEPDSVWEEVRERFVKEPIFEDIT
LESERKRIFKDFIHLLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSEEEDDHSKKK
RQRSESRSGSEHSSTEESERSYKKSKKHKKKNKKRRHKSDSPESEGEREKDKKEKERERE
KDKENEKERAKQRSDSRHKSPKKRTGKDSGNWDTSGSELSEGELESRRRTLLEQLDDDQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgaggttgccgcttgttggttggtcccaaggtaggccagggcccggagaagatcgagcc
atcatgtctgcgccagatggtgcaaatggaccaagtcaaccagcccatttcaccaatgga
ccacggatgctacggccagcatatatgactcatccagtcattcctcactatccacctatg
ggaatacctcctatgggtcagagaccaccaaacctggcaccagtttcacatggaatgatg
ccccaaatgatgccacctatgagtggacctccaatgggacagttgcctggaatgcatcca
tctgtgatgtctggactgatgatgcctcatatacctcagggtcccatacagcctgcggta
ccggcaggagtaagcaacatggatgcacctgtaggtgcaacagcaggtgctcaagccaca
catccaccagtttcaggcccgcaaccaggcacaagcagcaattctacaagtgaagagcat
cataagcaaaaatctttatggactgagcataaatcacctgatggcaggacatatttttat
aatattgaaacaaagcagtctacttgggaaaagcctgatgagcttaaaacacctactgag
caattgctatccaaatgtccctggaaggagttcaagtctgactctggaaagtcttactac
tataattcccagacaaaggaatcgcgctgggcaaagcccaaagaactagaagatcttgaa
gctattattaaagctgaagaaaatagcaaacaagaggattcttctccagcaccatctgct
cctcctgctgctgcacaagagactcctagtacagtggttgctcctgctacccctgctcct
gctgctcctgctcctgttcctgctgctgttgctgctcctgctattgcaactgccactgct
gccactaccacggctgctcctgtagctactgaaactgacctagcagttgctgatagtgca
gtatctgctgtagagaatgaaagtactggcactgttacaagtgaagagcaagagcaatct
gcagttccaactgtaccagagatagatgcagaagcctctaatagtgcaacagaagaacct
tctaaacaggagctctcagtggattcccccaaagaggagaaagaaaacagcaaacctgtt
aaaaaaacatatacatggaacacaaaagaagaagcaaagcaagcatttaaagaattgttg
aaagaaaagcgtgtgccatctactgcttcatgggaacaagctatgaaaatggttattaat
gatcccagatacagtgcattagcaaagttgagtgaaaaaaagcaagcctttaatgcttac
aaagttcagactgagaaagaagaaaaagaagaagcaagatcaaagtacaaagaagcaaaa
gaatcttatcaacgtttccttgaaaaccatgacaagatgacatctaccaccagatataaa
aaagcagagcagatgtttggagagacggaggtatggaatgccatatctgagcgcgatcgt
cttgaaatttatgaagatgtcctgttctttttggccaaaaaagagaaggaacaagcaaaa
cagttgcgaaaaaggaattgggaagctttaaaaaatatattggacaatatggctaatgta
acttactgtaccacttggtctgaagcacagcagtatctgatggacaacccaacttttgca
gaggatgaggagcttcagaatatggataaagaggatgcacttatctgctttgaagaacat
atcagagctttggaaaaagaagaggaagatgaaaaacagaaaggtatactcagggaaagg
cggcgacaacgtaaaaacagggagtctttccagatatttttggatgagctacatgaacat
gggcagctacattctatgtcatcatggatggaactatatccaaccataagttcagacatc
agatttagtaacatgcttggtcaaccaggatcaacagctcttgatctcttcaagttttat
gttgaagatctaaaagcacgatatcatgatgaaaaaaagataattaaagatattttgagg
gataaaggatttgtggttgaaattaatactacttttgaagactttgttatggttatcagc
tcaaccaagcgagcaacaaccttagatgctggaaatatcaaattggctttcaacagttta
ctagaaaaggcagaagcccgtgaacgagagagggaaaaggaagaagctcgcaaaatgaag
agaaaagagtctgcatttaagagtatgttaaaacaagctgcacctccaattgaaccagat
tctgtctgggaagaggttcgggagaggtttgttaaggaaccaatatttgaagatattact
ctagaatctgaacggaagcgaatatttaaagacttcatacatttacttgagcatgagtgt
cagcatcatcattcaaagaataagaaacattctaaaaagtctaaaaaacatcacaggaag
cgttctcgttcccgctcgggctcagattcagaggaggaggatgaccattctaaaaagaaa
agacaacgatcagaatcgcgatctggctctgaacactcatctactgaagaatctgagaga
agctataagaagtcaaaaaaacacaagaaaaaaaacaaaaagaggagacataagtctgat
tctcctgaatcagagggtgaacgagagaaagacaaaaaagaaaaagagagagagagagaa
aaggataaggaaaatgaaaaggagcgtgctaaacaaagatcagattctagacataaatct
ccaaaaaaacgaactggaaaagattctggcaattgggatacatcaggcagtgagctgagt
gaaggagaattagaaagccgaagaagaacccttttggagcaactggatgatgatcaataa
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