Geotrypetes seraphini (Gaboon caecilian): 117360574
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Entry
117360574 CDS
T09159
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117360574 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117360574 (VPS8)
Membrane trafficking [BR:
gsh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117360574 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Clathrin
TPR_VPS8_2
zf-RING_Vps41
TPR_Vps41
WD40_CDC20-Fz
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
117360574
NCBI-ProteinID:
XP_033800413
UniProt:
A0A6P8RDD2
LinkDB
All DBs
Position
5:153660171..154415482
Genome browser
AA seq
1431 aa
AA seq
DB search
MEEERRANEKEIASTSMMENFEDDPNKPFTRDTVLPLKFNYLDLEKELDSKNDLIDDKEF
DIPQVDTPPTLESILNETDDEDESFIPEDPSLLNIETVDTHSCDTSSLASSDSGDRTHLK
RRKKLHDAFSRHGSVMRRSLLKGVSAQIVSAADKVDAGLPTAIAVSNLIAVGTSHGLALI
FGKDPNQALRLCLGSTAVGAQYGAISALSINSDCSRLLCGFAKGQITMWDLASGKLLRSI
TDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCDSRCLFSGSKGEVCC
IEPLHAKAELRDHPITQYFLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWN
FVAQQSSVNPMLAFCRGDVVHFLLVKRDESGAIHVSKQKQLHLHYDLINFTWVNSRTVVL
LDSAEKLHVIDRQTQEELETMEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSI
CSYGGQIFYLGTKSVHVMLLRNWRERIDHLLKQECFTEALALAWSFHEGKAKAVVGLSGD
LSKRRVVVADRMVEILFQYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRTDLL
FTQMYDKLSENSVAKDVFLECLEPYILNDKLVGLTAQVMKDLLIHFQDRNLMDSVEACIV
HMDITSLDIQQVVLMCWENHLYDAMIYVYNSGMNDFISPLEKLFKVIASPLSAGKALTDE
QVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSPEASSEEEVYPYM
RTLLHFDTREFLNVLALTFEDFENDKQAVEYQQRMVDILLKVMVENSDFTPSQVGCLFTF
LARQLAKPENTLFVNRVLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEENRLI
RLAEKAEFYQICEFMYERKHQYDKIIDCYLQDPVRKEDVFNYIHNILSIPGYNAEEKQST
WDKAMGKIEELVALNPCKAADMIATHFIEQINSIINKLKDPFLLFQFLKSLLEPRDGAQI
SQELPLMNPAVSELYIDLLCGFSPLHVTEALKALEHYRIEETIQIAQKHKLLEASAYLLE
KKGDVHGAFLVMLQKLQSKLVVLTRETEKPKEVPPLKDVEDTLLETIALCQRASHSLNQQ
QREALWFPLLEAMMSPQKLFSPAASQQYSEPLKCLTMLVLNSMAAFIALPSILQRILQDP
VYGRGKLGEIQGLILGMLETFNYEQTLLETTTNLLNQDLHWSLSNLRACVTRGLNPKQDY
CCVCLQQYKRRQEAADEIIVFSCGHLYHSLCLLSKECTVEMVGQTRWTCYKCNSRNRGVQ
GSESVSELRQGRTSSLVQMKVTSHHSVSEECGNKKQTADTVLDPQQIQAFDQLCRMYRGT
SRLALLTELSRTQGGEKHGFLNVSQSGPAASSVFLNENFQLHLAPPPLTED
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaaaggagggccaacgagaaggaaatagcaagcacttcaatgatggagaat
tttgaagatgatccgaataaacctttcactcgggacacagttctgccgctgaagttcaac
tacctagacctggaaaaagaactagactccaaaaatgatcttatagatgacaaagaattt
gatatcccacaagttgatactcctccaactttagaaagcatcttgaatgagactgatgat
gaagatgagtcctttattccagaggatccttctctcttaaatatagaaactgttgataca
cactcttgtgatacatcttctttggcgagttcagatagtggggaccgtacacacctgaaa
aggaggaagaaattgcatgatgctttctcacggcatggatcagtgatgcgacgttccctt
ctaaagggtgtttctgcgcaaattgtatctgcagcagacaaagtggatgctggcttacca
actgcaatcgctgtttcaaatttgatagcagtgggaacctcacatggactggccttaata
tttggaaaagatccaaaccaggccttgcggctatgcctgggcagcactgcagttggggct
cagtatggtgccatttctgctcttagtatcaacagcgattgttcccgattactttgcggc
ttcgcaaaaggacagattaccatgtgggacttggccagtgggaaactcttaaggtccata
acagatgcccaccctccaggaacagcaattttgcacatcaagtttacagatgacccaact
cttgccatttgcaatgacagtggaggctctgtgttcgagttgacatttaagagagtcatg
ggagtgagaacatgtgactctcggtgccttttcagtggttccaagggtgaagtttgctgc
attgagcctttgcatgcaaaagcagagctaagagatcatcccatcactcagtacttctta
ttggctatggcatctttaactaagattctggttattggattgaagccgtctcttaaagtt
tggatgacttttccctatggtcgtatggatccttccagtgttccgcttttggcctggaat
tttgtagctcagcagagttcagtgaatccaatgctggcgttctgtcgaggggatgtcgta
catttcctcttggtaaagagagatgaatcaggggcaatacatgttagtaagcaaaagcaa
cttcacctgcactatgaccttataaactttacatgggtcaattctcggacagtagtgctg
ctggatagtgctgagaagctgcatgttatagatcgtcagactcaagaagagttagagact
atggagatttctgaagttcagctggtatataacagcagccactttaaatccttggctaca
ggaggcaatgtcagtcaagcactggcattagttggagaaaaagcctgctaccagtccatc
tgcagctatggtggtcagatcttctatttgggcacaaagtcagttcatgtgatgctgttg
agaaactggagagagagaattgatcaccttctaaaacaagaatgttttactgaagcactg
gctctagcctggtcttttcatgaaggcaaagcaaaggctgttgtagggttgtctggagat
ctaagcaaaagaagagttgtggttgctgatcggatggtggaaatccttttccagtatgca
gatcgtgctctgaagaaatgtccagatcagggtaaaatccaagtgatggagcagcatttt
caggacatggtgcctgtcatagttgattattgtctgttgctgcagcgcacggatcttttg
ttcactcagatgtatgacaagctcagtgaaaattcagtggccaaggatgtttttcttgaa
tgcttggagccatatatattgaatgacaaattggtgggactcacggcacaggtgatgaaa
gatctgctcatccactttcaggaccgaaacttgatggatagtgttgaggcttgcattgtg
cacatggacatcacaagcctggacatacaacaggtggttcttatgtgctgggaaaaccat
ctttatgatgcaatgatttatgtctacaacagcggaatgaatgacttcatcagcccattg
gagaaactattcaaggtcattgcctcaccccttagtgcaggaaaggctcttacagatgag
caggttgttatgggcaacaagcttcttgtctacataagctgctgtctggcaggccgtgct
tatcctttaggtgacatccctgaagatcttgtccctttggttaaaaatcaggtttttgag
tttctaatccggctgcattctccagaagcatcctctgaagaggaggtgtacccttacatg
cgtaccctgttgcactttgacacgagggagtttctgaatgtcctagcattgacttttgaa
gactttgaaaatgacaaacaagctgtggaatatcaacagagaatggttgacattttatta
aaggtgatggtagagaattctgatttcactccatcacaagtaggatgtctcttcaccttc
cttgcccggcaacttgcaaaaccagagaacaccctgtttgtgaatcgggtgctttttgac
caagtgcttgaatttctctgcagcccagatgatgactcacgacattcagaaagacagcag
gttcttcttgaactgctccaagctggaggaatagttcagtttgaagaaaacaggctgatt
cgtctggcagaaaaggcagaattctatcaaatttgtgagtttatgtatgaacgaaaacat
cagtatgacaaaataatcgattgctacttacaagatccagtgagaaaggaagatgttttc
aactacatacacaacatcttatctattcctgggtacaatgctgaggagaagcagtccacc
tgggataaagccatgggaaaaattgaggagttggtcgctctaaacccttgtaaagctgct
gacatgattgccacccatttcattgaacagattaattcaattatcaataagcttaaggat
ccatttttacttttccagtttctgaaaagcctattggagcccagagatggtgctcaaatc
agtcaagaattgcctctgatgaatccagctgtcagtgagttgtatattgacctactatgt
ggatttagtcctctccatgttactgaggcactgaaagccttggagcactacagaatagaa
gagactattcagattgctcaaaaacacaagcttctggaagcgtctgcctatctcttggag
aagaagggtgatgtccatggagcattccttgtcatgcttcaaaaactgcagagcaagctt
gtggtgcttacacgggaaactgaaaagccaaaagaagtgcctccattaaaggatgttgaa
gataccctcttggaaaccattgcactttgtcaaagggcatcacacagtttaaaccagcag
caacgagaggccctctggtttccattgctggaggccatgatgtcacctcaaaagctgttc
agtcctgcagcatctcagcaatactctgaacctctgaagtgcttgaccatgctagtgctg
aacagtatggcagcttttattgcccttccatcaattttacagagaatcttacaagatcca
gtatatggcagagggaaactgggagagatacaaggtcttatattgggaatgctggaaaca
tttaactatgaacaaactcttttagagaccacaaccaacttgcttaaccaggatctgcac
tggtccctctccaatctaagagcctgcgtgactaggggcctaaatccaaaacaggattac
tgctgtgtctgcctgcaacagtacaagagaagacaggaggcagctgacgaaatcatcgtt
tttagctgtggtcatctttaccactctctgtgcctgctaagtaaagaatgtactgtggaa
atggtggggcagacacgatggacctgctacaagtgcaactccagaaacagaggagttcaa
ggaagtgagtctgtttctgagctcaggcagggaagaacatcttccttggtgcagatgaaa
gtgacatctcaccattcggtcagcgaagaatgtgggaataaaaagcaaactgctgatact
gtgttggatcctcaacaaatccaagcatttgatcaactgtgtcgtatgtatagaggaaca
tcaaggctagcacttttgacagaactatctcgtactcagggtggtgagaaacatgggttc
ctaaatgtatctcagagcggtcctgcagctagcagcgtcttcctgaatgaaaacttccag
ttgcacctcgcaccccctcctttaaccgaagattaa
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