Geotrypetes seraphini (Gaboon caecilian): 117360652
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Entry
117360652 CDS
T09159
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04140
Autophagy - animal
gsh04148
Efferocytosis
gsh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117360652 (VPS16)
04148 Efferocytosis
117360652 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117360652 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117360652 (VPS16)
Membrane trafficking [BR:
gsh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117360652 (VPS16)
Hops complex
117360652 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Mur_ligase_C
Motif
Other DBs
NCBI-GeneID:
117360652
NCBI-ProteinID:
XP_033800643
UniProt:
A0A6P8RDK2
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Position
5:125051462..126202238
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AA seq
835 aa
AA seq
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MACYTANWNPLGSVFYRKFDLYSMDWNLKEDLRDCLIAPGPYGGPIALLKNYSAKGKSSG
LRPVLEIYTASGLPLSSIPWKSGQVVQLGWTVTEDLLCIQEDGSVLIYDLFCGFKRHFSM
GNEVFQHHVVEARVFHTEYGTGVAILTKASRFTLTTNIDDLKLRRMPDIPGPPSCWAVLF
QDRATMILFAFGKDLYLLDHTSCSLMVPPGMNPLAGSYLAMSISFNHKLLALFTEPGYIW
MGSSSLKEKFDDHNSSIQLSPKQMVWCTRPRSKQHAVVLMWDRLLMLVGNSTESIQFVLD
EESYLIPELDGVRIFSRSTHEFLHEITGATEEIFKIASMAPGALLLEAQKEYEKASQKAD
EYLREIKDKGLLSEAVTQCIEAAGYEQEPEMQKSLLRAASFGKCFIDKFSPDGFVKMCSE
LRVLNAIRDYQIGIPLSYTQFRQLTIEVLLDRLVLRRLYSLAIKICDYLRLSEFQGVSRI
LAHWACYKVQQKDKSDEEIAKAINQKLGDTPGISYSEIAARAHACGRMELAIKLLEYEPR
FGEQVPLLLKMKRSKLALSKAIESGDTDLVYTVVTYLKNELNRAEFFMTLQNQPVALSLY
RQFCKHQELETLKDLYNQDDDHQELGNFYMRSSYTSEKRIEGRVSALQSAVDEYSKAKNE
FACKATEDQIKLLRMQHRLEDELDKSYLDMSLHDTVYNLVMDGMFSKAEQFYKEFKIPDK
RYWWLKISALAEREDWEEMEKFSKSKKSPIGYLPFVEMCMKQHNRYEAKKYVARVAPEQR
VRSYILVGDLDQAAEAAIEHKNENEMILVQSKCTPTTDSVILEKINRAKTQILKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttatacagcaaactggaacccacttggatcggtattttatcggaagtttgat
ttatacagcatggactggaacctgaaagaggatctgagggactgtcttattgctcctggc
ccttatggaggtcctattgccctgcttaagaattactctgcaaaagggaagtcctctggt
ttaaggcctgttctggaaatttatacggcatcagggcttcctctctccagcataccatgg
aagagcggccaggtggtgcagctgggctggacagtaactgaggacctgctttgcattcaa
gaggatggatctgtgcttatctatgatttattttgtggattcaaacgccatttcagcatg
ggcaatgaggtttttcagcaccatgtggtggaagctagagttttccatactgagtacggt
actggtgtagccatactaaccaaagcctctcggtttaccctcaccacgaatattgatgat
cttaagctgcgccggatgccagatataccaggtcctccatcctgctgggctgttctgttt
caagacagggcaaccatgatcttgtttgcatttggtaaggatctatatctcttggaccac
acatcttgttccttgatggtacctccaggaatgaatcctctggctgggtcatatctggct
atgtccatctctttcaatcataaactactagcactttttactgagcctgggtatatctgg
atgggatcatcatcattaaaggaaaaatttgatgaccacaactcaagtatacagttgtct
ccaaaacaaatggtttggtgtacaagaccccggagtaagcagcatgctgttgtattgatg
tgggacagacttctcatgctggttggaaattctactgaaagcattcaatttgttttggat
gaggaatcatacttgatccctgaactggatggagtaagaatcttctctcgttccacacat
gagtttcttcatgaaatcacaggggccactgaagagatctttaaaattgcatcaatggca
cctggagcccttctgctggaggcacagaaggaatatgagaaagcaagtcaaaaagctgat
gagtaccttcgagagataaaggacaaagggctgctatctgaggcagtgacccagtgcata
gaagcagcaggctatgaacaagaacctgagatgcagaagtctttgctcagggcagcttcc
tttggcaaatgttttattgacaagttctcccctgatggcttcgtgaagatgtgcagtgag
ttgcgagttctcaatgctattcgagattatcaaattgggatcccattgagctacacccaa
ttccgtcaactcaccattgaagttctgctggacagattagttttacgaagactttactct
ctcgctattaaaatctgtgattacctgcggttgtcggaatttcaaggagttagtcgaata
ttggctcactgggcatgctataaggttcagcagaaggacaagtctgatgaagagatagca
aaagccatcaatcaaaagctgggcgacacaccgggtatttcatactctgagattgctgcc
agggcacatgcctgtggaagaatggagcttgctataaagcttttggaatatgaacctaga
tttggggagcaggtacctttgctgttaaagatgaagagaagcaaacttgccttgagcaaa
gcaattgaaagtggagatactgatctggtgtacactgttgtgacatacttgaagaatgaa
ctaaaccgtgcagagtttttcatgacattgcagaatcagccagtggccttgagtctttac
cgacagttttgtaaacaccaggaacttgaaactttaaaggatctctataatcaagatgat
gatcatcaggaacttggaaatttctatatgcgttctagctacacctcagaaaagagaatt
gagggaagagtctcagcactgcagagtgctgttgatgagtacagcaaggccaagaatgaa
tttgcttgtaaggcaaccgaggatcaaattaagctgctgcgaatgcaacacaggttagag
gatgaactggataaatcgtacttagacatgtccctgcatgacacagtttataatctggta
atggatggcatgttcagcaaagctgagcagttctacaaagaattcaaaattcctgacaaa
aggtactggtggctgaagatttctgctctggcagagagagaagactgggaggaaatggaa
aagttttccaaaagtaaaaaatcacctatcggctatctgccctttgttgaaatgtgtatg
aaacaacataaccgctatgaggcaaagaaatatgtggcaagagtggctccggaacagagg
gtcagatcatatatcctggtgggggatttggatcaagctgctgaggctgcaatagaacac
aagaatgagaatgaaatgatcctggttcagtctaaatgtactcccaccactgacagtgtc
attctggagaagatcaaccgagcaaaaactcagattttgaagaaataa
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