Geotrypetes seraphini (Gaboon caecilian): 117360838
Help
Entry
117360838 CDS
T09159
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04382
Cornified envelope formation
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04518
Integrin signaling
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117360838 (COL4A6)
04518 Integrin signaling
117360838 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117360838 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117360838 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117360838 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117360838 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117360838 (COL4A6)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117360838 (COL4A6)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117360838 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117360838
NCBI-ProteinID:
XP_033801203
UniProt:
A0A6P8RE74
LinkDB
All DBs
Position
5:20357868..20815374
Genome browser
AA seq
1713 aa
AA seq
DB search
MRTGDFLLLCLAAGSVRAGGKKFYQGPCVGRDCSGGCQCIPEKGSRGLPGYLGPQGTMGP
PGFPGPEGLPGPKGERGSQGAPGGTGFKGDQGQMGVPGFQGINGIPGHTGQSGIRGLPGL
DGCNGTIGDPGDPGADGIPGAPGAAGHPGFKGQKGEPAIARGGFKGSKGESGQRGSDGGL
GLQGFPGPEGSAGPRGLPGVPGPPGVPGLPGPQGNMGLGFQGEKGEKGDVGLPGDPGPPS
SSGTEEFMGVPKGIKGEKGDPGPRGNPGFEGPTGFPGFGGVGEKGETGIPGWPGHRGLPG
SDGFVGFPGSKGHPGFPGFNGLEGTPGVKGEPGDVGPPGLPTVIDEEGSVVSGPPGDQGV
PGPSGFKGDEGFAGFPGPPGPPGFPALIQGTPGAQGFPGVPGIRGEKGDPGRTEFGLPGP
PGPDGLPGPPGPPGLPGQPGSTSPIFRPARIQIGEPGLPGQPGPRGPPGAIGPIGFKGRA
GDCACDGGDTDQGPPGRPGALGVPGQHGFPGSKGLRGDPGSTGLPGLHGPPGFSGQAGLP
GFKGEKGDPSFSSGKGSRGDLGVPGLQGSKGLPGTPGSDGRPGLPGRPGPPGDGGQGFPG
AKGFPGSPGQKGRRGESGLSGFGVPGIPGNRGPAGNAGLDGLPGQPGLPGPPGDCCCGEK
VGNEVLDTEGGTTLPCIIPGDYTPPGPPGLPGFKGIKGAHGFPGVPGQPGFDGPKGLPGT
PGQFGIPGPPGFPGPHGDQGPQGFPGLQGKEGPSGKNGAPGSPGFKGVTGEVLGAETGRP
GEPGRPGFPGDKGFPGESGLPGQKGADGRPGLQGAKGEQGTPGFPGAAGLQGPPGPDGPF
GIQGRPGPVGLPGFPGVIGCQGSPGGKGLRGDGGYPGPIGKKGLPGLPGPSGPPGQLGPS
GLPGPSGEDGLPGFSSLKGVKGSPGMRGFPGAPGLPGISGGSGLKGSSGSPGIPGSLGFP
GQPGEKGDRGPQGPPGLPAPFEPSMIRTLKGDRGSYGPTGQLGYPGATGHKGLPGKPGFP
GLPGSPGSPGREKGFPGDLGIPGPLGSAGFPGPKGESGIAGFPGSPGESGTEGFPGISGS
PGIAGFPGPQGDRGDSTGQLGWPGAKGECGVPGIPGGRGSDGPPGDLGLAGIPGIPAPKG
APGNLGQPGPPGHPGLTGLRGNSGLSGSKGFPGMPGFPGSPGPAGINGDPGSPGISGLNG
LAGMKGPTGTPGLSEPGRPGFPGVPGTKGEEGSPGIRIGAIGNPGHKGSVGEGGPPGVVG
LPGPSGPPGYTLPSAIPGLPGDHGHPGVNGYAGPPGPPGPRGPPGPATDQGDTGDSGFPG
IPGTPGQKGDTGFPGSSGILGAPGLKGLRGDPGYKGTLGKDGPIGDPGFPGLKGEIGSSG
VRGFPGAPGPAPTVGDYFAAPGLPGSPGLDGFPGSPGEPGFQGRTGLQGPKGVLGRPGQM
GKVGPPGLPGVVGDPGFSGNPGTTGFEGAPGKQGLLGLPGMPGRSVNIGYTLVKHSQSEQ
IPPCPLGMAKLWEGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFIYCNINEVCYYASR
NDKSYWLSTTAPIPMMPVSHSQIPKYISRCSVCEAPSQAVAVHSQDITIPQCPVGWRSLW
IGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVE
AAQQFLGAPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgaggacaggggattttcttctgctttgcctggcggcgggatcggtgcgagcgggagga
aagaaattctatcaaggaccttgtgtgggccgggattgcagtgggggctgtcaatgtatt
ccagagaaaggcagtcggggcctgccaggttatcttgggcctcagggaacaatgggccct
ccaggatttcctggaccagaaggtttgccagggcctaaaggagagagaggatcccagggg
gctccaggaggaactggatttaaaggcgatcagggacaaatgggagttcctggatttcag
ggcattaatggaattccgggacataccgggcaatctggtataagaggcctgcctggccta
gatggctgtaatggtaccattggagaccctggagatcctggcgcagatggaattcctggg
gcacctggcgcagctggtcatcctggtttcaagggtcaaaagggagaacctgccattgct
cggggtggtttcaaaggatcaaagggtgagagcggccagcgtggatcggatgggggcctc
ggcctgcaaggtttcccaggaccagaaggttctgcaggacccaggggattgccgggcgtc
ccaggtccacctggagttcctggtctaccaggtccccaaggtaacatgggattaggtttc
caaggggagaaaggagaaaaaggagatgtaggtttaccaggtgacccgggtccaccatcg
tcctctggaacagaagaatttatgggcgtcccaaaaggaatcaaaggagaaaagggtgac
cctggccctagaggtaatcctggatttgaaggtcctactgggtttccgggttttggcgga
gtgggagaaaaaggagaaactggcattcccggttggcctgggcatcggggccttcctggt
tcggacggatttgttggatttccaggatcaaagggtcaccctgggtttcctggctttaat
ggccttgaagggactccaggagtcaagggtgaaccaggggatgtgggtccaccaggtctt
cccacagtcatagatgaagaggggtcggtggtttcaggtcctccaggagatcaaggtgtt
ccgggaccctcaggttttaagggggatgaaggatttgctggcttcccaggtcctcctggt
ccaccaggatttcctgcattaattcaaggtacacctggagctcaaggatttccaggggtt
ccaggaatcagaggtgaaaaaggagacccagggaggacagaatttggattgcctggacct
ccagggccagatggtttaccaggaccacctggacccccaggactgcctggacaacctggc
tcaacaagtcccatcttcagacctgcacgtatacagataggagaacctggactacctgga
cagcctggaccgcggggtccacctggagccataggaccaatcggctttaaagggagagct
ggtgactgtgcgtgcgatggaggtgatacagatcagggtccccctggcaggcctggtgct
cttggtgttccaggccaacatgggtttcctggctcgaaaggtttgcgcggggatccaggc
tccacaggtcttccagggttgcatggacctccaggtttttctggccaagcaggacttcca
ggctttaagggcgagaaaggggatccatctttttcatctggtaaaggaagccgtggagat
ctgggtgtaccaggacttcaggggtccaagggtcttccgggaacacctggcagtgatggt
cgtccaggtttgccaggccgcccagggcctccaggtgatggtggacaaggttttccaggt
gctaaaggcttccctggttcccctggccaaaagggccgccgaggtgaaagtggcctttca
ggtttcggagttccaggtattcctggaaatcgcggacctgcagggaatgcaggacttgat
ggacttccaggacagccgggtcttccaggcccaccaggtgactgctgctgcggggagaag
gttggtaatgaagtcttagacacagagggaggtaccactttaccttgtataattcctgga
gactatactccaccaggtcctccaggactaccagggtttaaaggtattaagggtgcccat
ggcttccctggcgtgccaggtcaacctggatttgatgggccaaaaggtttaccaggtacc
ccaggacaatttggaataccaggaccaccaggatttccaggacctcatggagatcagggt
cctcaaggattcccaggactgcaaggaaaggaaggtccgtctggcaagaatggggcacct
ggatctcctggttttaaaggagttaccggtgaagtcttgggtgctgagactggacgtcca
ggtgaaccgggccgacctggattcccaggagataaaggatttccaggagaatctggctta
ccaggacaaaaaggggctgatggaagaccaggtttacagggtgcaaaaggtgaacaaggc
actccaggttttcctggtgctgctggcttacaggggcccccgggacctgatgggccattt
ggcatccaaggacgaccaggtcctgtggggctgccagggtttccaggagtaataggctgt
caagggtctccaggtggaaaaggtttgcgtggtgacgggggatatccaggtcccattggc
aagaaagggcttccaggtcttcctgggccttctggacctcctggccaattgggaccttca
gggcttcctggacctagtggtgaagatggacttccagggttttcttcgttaaaaggtgtg
aagggctcaccaggtatgaggggcttccctggtgcaccaggactgccaggtatttcaggt
ggcagtgggctgaagggatcttccggctcaccaggcataccaggatcacttgggtttcct
ggacaacctggagaaaaaggtgacagaggtccccagggtccaccgggtctccctgcaccg
tttgagccgtccatgatacgcaccttgaagggtgacagaggatcgtatggtccaacaggg
cagctgggatatcctggagccacaggtcacaaaggattacctggaaagcctggattccct
ggacttccaggttccccaggatccccaggcagagagaagggattccctggagatctaggc
atcccaggtccattgggatcggctggcttcccaggtcctaaaggagaaagtggcattgca
ggattccctggatctcctggagaaagtggtacagaaggctttccaggaatttctggatcc
ccaggcattgctggctttcctggaccacagggtgatcgaggagattccacaggacagctt
ggttggcctggagcaaaaggagaatgtggagtgcctggaatcccaggcggtaggggatca
gatggaccaccgggtgatctaggcctcgccggaatccctggcatcccagctcctaaaggt
gcccctggaaatcttggacaaccaggaccaccaggacaccctggacttactggattgagg
ggaaactcgggtttgtcagggtcaaagggctttcccggaatgccaggtttccctggatca
cctggcccagcagggatcaatggggaccctggatctccagggataagtggattgaatggc
ttggcaggcatgaaagggcctacgggaacaccaggtttgagtgaaccaggtcgcccaggg
tttcctggggtccctggcacgaagggtgaagaaggctctccaggtatccgaataggagcc
atcggcaaccctggacacaaaggatcagtgggagaaggagggcctcctggtgtagtggga
ttgcctggaccatctggaccacctggttacacgcttccttcagctattcctggactacca
ggtgaccatggacatcctggagtcaatggatatgcaggccctcctggtcctccaggccca
cgtggtcctccaggaccagccacagaccaaggtgatactggtgactcaggcttccctggt
atcccaggtacaccaggtcagaaaggagacactggatttcctggttcttctggaattctt
ggagccccaggattaaaaggcttgagaggtgatccaggttataagggaacattgggtaaa
gatggaccaattggagaccctggttttcctggactgaaaggtgaaattgggagttcaggt
gtccgtggttttccaggtgctccaggtccagccccaactgtaggagattactttgctgct
ccaggattgccgggttcgcctgggcttgatggtttcccaggttcccctggagagccagga
tttcagggacgaactgggttacaaggtcccaaaggtgtattgggcagaccaggtcagatg
gggaaggttggtccacctggtttgcctggcgtggtaggagacccaggcttctctggtaat
ccagggacaacaggatttgaaggtgctccaggaaagcaaggtctgctgggccttcccggg
atgcccgggcggagtgttaacattgggtataccttggtgaagcacagccagtcggaacag
atcccaccatgtccacttggcatggctaagctgtgggaagggtacagcctgctgtatgtg
gaaggacaggagaaggcacacaaccaagacctgggcctcgctggctcgtgtttgcctcgt
ttcagcaccatgcccttcatttactgcaacatcaacgaggtatgctactacgccagccgg
aacgacaaatcctattggctctccaccacggcgcctattcccatgatgccagtgagtcac
tcgcaaatcccgaagtacatcagccgctgctcagtgtgtgaagctccttctcaagcggtc
gctgtacacagtcaagatatcactattccacagtgccccgtgggctggcgcagtctgtgg
attggatattccttccttatgcacacggcggctggcgctgaaggcgggggccagtccctg
gtctctcctggatcctgcttggaggacttccgggctacgcctttcatcgaatgcaatgga
gcccgaggaacctgtcattactttgccaacaagtacagtttttggctgaccacggtggaa
gcagcgcagcagtttcttggcgctcctccgtcagaaacgctgaaggccggacagctgcgg
acccgcgtgagccgctgccaagtgtgcatgaagaatttgtag
DBGET
integrated database retrieval system
