Geotrypetes seraphini (Gaboon caecilian): 117360838
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Entry
117360838 CDS
T09159
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117360838 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117360838 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117360838 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117360838 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117360838 (COL4A6)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117360838 (COL4A6)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117360838 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117360838
NCBI-ProteinID:
XP_033801203
UniProt:
A0A6P8RE74
LinkDB
All DBs
Position
5:20357868..20815374
Genome browser
AA seq
1713 aa
AA seq
DB search
MRTGDFLLLCLAAGSVRAGGKKFYQGPCVGRDCSGGCQCIPEKGSRGLPGYLGPQGTMGP
PGFPGPEGLPGPKGERGSQGAPGGTGFKGDQGQMGVPGFQGINGIPGHTGQSGIRGLPGL
DGCNGTIGDPGDPGADGIPGAPGAAGHPGFKGQKGEPAIARGGFKGSKGESGQRGSDGGL
GLQGFPGPEGSAGPRGLPGVPGPPGVPGLPGPQGNMGLGFQGEKGEKGDVGLPGDPGPPS
SSGTEEFMGVPKGIKGEKGDPGPRGNPGFEGPTGFPGFGGVGEKGETGIPGWPGHRGLPG
SDGFVGFPGSKGHPGFPGFNGLEGTPGVKGEPGDVGPPGLPTVIDEEGSVVSGPPGDQGV
PGPSGFKGDEGFAGFPGPPGPPGFPALIQGTPGAQGFPGVPGIRGEKGDPGRTEFGLPGP
PGPDGLPGPPGPPGLPGQPGSTSPIFRPARIQIGEPGLPGQPGPRGPPGAIGPIGFKGRA
GDCACDGGDTDQGPPGRPGALGVPGQHGFPGSKGLRGDPGSTGLPGLHGPPGFSGQAGLP
GFKGEKGDPSFSSGKGSRGDLGVPGLQGSKGLPGTPGSDGRPGLPGRPGPPGDGGQGFPG
AKGFPGSPGQKGRRGESGLSGFGVPGIPGNRGPAGNAGLDGLPGQPGLPGPPGDCCCGEK
VGNEVLDTEGGTTLPCIIPGDYTPPGPPGLPGFKGIKGAHGFPGVPGQPGFDGPKGLPGT
PGQFGIPGPPGFPGPHGDQGPQGFPGLQGKEGPSGKNGAPGSPGFKGVTGEVLGAETGRP
GEPGRPGFPGDKGFPGESGLPGQKGADGRPGLQGAKGEQGTPGFPGAAGLQGPPGPDGPF
GIQGRPGPVGLPGFPGVIGCQGSPGGKGLRGDGGYPGPIGKKGLPGLPGPSGPPGQLGPS
GLPGPSGEDGLPGFSSLKGVKGSPGMRGFPGAPGLPGISGGSGLKGSSGSPGIPGSLGFP
GQPGEKGDRGPQGPPGLPAPFEPSMIRTLKGDRGSYGPTGQLGYPGATGHKGLPGKPGFP
GLPGSPGSPGREKGFPGDLGIPGPLGSAGFPGPKGESGIAGFPGSPGESGTEGFPGISGS
PGIAGFPGPQGDRGDSTGQLGWPGAKGECGVPGIPGGRGSDGPPGDLGLAGIPGIPAPKG
APGNLGQPGPPGHPGLTGLRGNSGLSGSKGFPGMPGFPGSPGPAGINGDPGSPGISGLNG
LAGMKGPTGTPGLSEPGRPGFPGVPGTKGEEGSPGIRIGAIGNPGHKGSVGEGGPPGVVG
LPGPSGPPGYTLPSAIPGLPGDHGHPGVNGYAGPPGPPGPRGPPGPATDQGDTGDSGFPG
IPGTPGQKGDTGFPGSSGILGAPGLKGLRGDPGYKGTLGKDGPIGDPGFPGLKGEIGSSG
VRGFPGAPGPAPTVGDYFAAPGLPGSPGLDGFPGSPGEPGFQGRTGLQGPKGVLGRPGQM
GKVGPPGLPGVVGDPGFSGNPGTTGFEGAPGKQGLLGLPGMPGRSVNIGYTLVKHSQSEQ
IPPCPLGMAKLWEGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFIYCNINEVCYYASR
NDKSYWLSTTAPIPMMPVSHSQIPKYISRCSVCEAPSQAVAVHSQDITIPQCPVGWRSLW
IGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVE
AAQQFLGAPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgaggacaggggattttcttctgctttgcctggcggcgggatcggtgcgagcgggagga
aagaaattctatcaaggaccttgtgtgggccgggattgcagtgggggctgtcaatgtatt
ccagagaaaggcagtcggggcctgccaggttatcttgggcctcagggaacaatgggccct
ccaggatttcctggaccagaaggtttgccagggcctaaaggagagagaggatcccagggg
gctccaggaggaactggatttaaaggcgatcagggacaaatgggagttcctggatttcag
ggcattaatggaattccgggacataccgggcaatctggtataagaggcctgcctggccta
gatggctgtaatggtaccattggagaccctggagatcctggcgcagatggaattcctggg
gcacctggcgcagctggtcatcctggtttcaagggtcaaaagggagaacctgccattgct
cggggtggtttcaaaggatcaaagggtgagagcggccagcgtggatcggatgggggcctc
ggcctgcaaggtttcccaggaccagaaggttctgcaggacccaggggattgccgggcgtc
ccaggtccacctggagttcctggtctaccaggtccccaaggtaacatgggattaggtttc
caaggggagaaaggagaaaaaggagatgtaggtttaccaggtgacccgggtccaccatcg
tcctctggaacagaagaatttatgggcgtcccaaaaggaatcaaaggagaaaagggtgac
cctggccctagaggtaatcctggatttgaaggtcctactgggtttccgggttttggcgga
gtgggagaaaaaggagaaactggcattcccggttggcctgggcatcggggccttcctggt
tcggacggatttgttggatttccaggatcaaagggtcaccctgggtttcctggctttaat
ggccttgaagggactccaggagtcaagggtgaaccaggggatgtgggtccaccaggtctt
cccacagtcatagatgaagaggggtcggtggtttcaggtcctccaggagatcaaggtgtt
ccgggaccctcaggttttaagggggatgaaggatttgctggcttcccaggtcctcctggt
ccaccaggatttcctgcattaattcaaggtacacctggagctcaaggatttccaggggtt
ccaggaatcagaggtgaaaaaggagacccagggaggacagaatttggattgcctggacct
ccagggccagatggtttaccaggaccacctggacccccaggactgcctggacaacctggc
tcaacaagtcccatcttcagacctgcacgtatacagataggagaacctggactacctgga
cagcctggaccgcggggtccacctggagccataggaccaatcggctttaaagggagagct
ggtgactgtgcgtgcgatggaggtgatacagatcagggtccccctggcaggcctggtgct
cttggtgttccaggccaacatgggtttcctggctcgaaaggtttgcgcggggatccaggc
tccacaggtcttccagggttgcatggacctccaggtttttctggccaagcaggacttcca
ggctttaagggcgagaaaggggatccatctttttcatctggtaaaggaagccgtggagat
ctgggtgtaccaggacttcaggggtccaagggtcttccgggaacacctggcagtgatggt
cgtccaggtttgccaggccgcccagggcctccaggtgatggtggacaaggttttccaggt
gctaaaggcttccctggttcccctggccaaaagggccgccgaggtgaaagtggcctttca
ggtttcggagttccaggtattcctggaaatcgcggacctgcagggaatgcaggacttgat
ggacttccaggacagccgggtcttccaggcccaccaggtgactgctgctgcggggagaag
gttggtaatgaagtcttagacacagagggaggtaccactttaccttgtataattcctgga
gactatactccaccaggtcctccaggactaccagggtttaaaggtattaagggtgcccat
ggcttccctggcgtgccaggtcaacctggatttgatgggccaaaaggtttaccaggtacc
ccaggacaatttggaataccaggaccaccaggatttccaggacctcatggagatcagggt
cctcaaggattcccaggactgcaaggaaaggaaggtccgtctggcaagaatggggcacct
ggatctcctggttttaaaggagttaccggtgaagtcttgggtgctgagactggacgtcca
ggtgaaccgggccgacctggattcccaggagataaaggatttccaggagaatctggctta
ccaggacaaaaaggggctgatggaagaccaggtttacagggtgcaaaaggtgaacaaggc
actccaggttttcctggtgctgctggcttacaggggcccccgggacctgatgggccattt
ggcatccaaggacgaccaggtcctgtggggctgccagggtttccaggagtaataggctgt
caagggtctccaggtggaaaaggtttgcgtggtgacgggggatatccaggtcccattggc
aagaaagggcttccaggtcttcctgggccttctggacctcctggccaattgggaccttca
gggcttcctggacctagtggtgaagatggacttccagggttttcttcgttaaaaggtgtg
aagggctcaccaggtatgaggggcttccctggtgcaccaggactgccaggtatttcaggt
ggcagtgggctgaagggatcttccggctcaccaggcataccaggatcacttgggtttcct
ggacaacctggagaaaaaggtgacagaggtccccagggtccaccgggtctccctgcaccg
tttgagccgtccatgatacgcaccttgaagggtgacagaggatcgtatggtccaacaggg
cagctgggatatcctggagccacaggtcacaaaggattacctggaaagcctggattccct
ggacttccaggttccccaggatccccaggcagagagaagggattccctggagatctaggc
atcccaggtccattgggatcggctggcttcccaggtcctaaaggagaaagtggcattgca
ggattccctggatctcctggagaaagtggtacagaaggctttccaggaatttctggatcc
ccaggcattgctggctttcctggaccacagggtgatcgaggagattccacaggacagctt
ggttggcctggagcaaaaggagaatgtggagtgcctggaatcccaggcggtaggggatca
gatggaccaccgggtgatctaggcctcgccggaatccctggcatcccagctcctaaaggt
gcccctggaaatcttggacaaccaggaccaccaggacaccctggacttactggattgagg
ggaaactcgggtttgtcagggtcaaagggctttcccggaatgccaggtttccctggatca
cctggcccagcagggatcaatggggaccctggatctccagggataagtggattgaatggc
ttggcaggcatgaaagggcctacgggaacaccaggtttgagtgaaccaggtcgcccaggg
tttcctggggtccctggcacgaagggtgaagaaggctctccaggtatccgaataggagcc
atcggcaaccctggacacaaaggatcagtgggagaaggagggcctcctggtgtagtggga
ttgcctggaccatctggaccacctggttacacgcttccttcagctattcctggactacca
ggtgaccatggacatcctggagtcaatggatatgcaggccctcctggtcctccaggccca
cgtggtcctccaggaccagccacagaccaaggtgatactggtgactcaggcttccctggt
atcccaggtacaccaggtcagaaaggagacactggatttcctggttcttctggaattctt
ggagccccaggattaaaaggcttgagaggtgatccaggttataagggaacattgggtaaa
gatggaccaattggagaccctggttttcctggactgaaaggtgaaattgggagttcaggt
gtccgtggttttccaggtgctccaggtccagccccaactgtaggagattactttgctgct
ccaggattgccgggttcgcctgggcttgatggtttcccaggttcccctggagagccagga
tttcagggacgaactgggttacaaggtcccaaaggtgtattgggcagaccaggtcagatg
gggaaggttggtccacctggtttgcctggcgtggtaggagacccaggcttctctggtaat
ccagggacaacaggatttgaaggtgctccaggaaagcaaggtctgctgggccttcccggg
atgcccgggcggagtgttaacattgggtataccttggtgaagcacagccagtcggaacag
atcccaccatgtccacttggcatggctaagctgtgggaagggtacagcctgctgtatgtg
gaaggacaggagaaggcacacaaccaagacctgggcctcgctggctcgtgtttgcctcgt
ttcagcaccatgcccttcatttactgcaacatcaacgaggtatgctactacgccagccgg
aacgacaaatcctattggctctccaccacggcgcctattcccatgatgccagtgagtcac
tcgcaaatcccgaagtacatcagccgctgctcagtgtgtgaagctccttctcaagcggtc
gctgtacacagtcaagatatcactattccacagtgccccgtgggctggcgcagtctgtgg
attggatattccttccttatgcacacggcggctggcgctgaaggcgggggccagtccctg
gtctctcctggatcctgcttggaggacttccgggctacgcctttcatcgaatgcaatgga
gcccgaggaacctgtcattactttgccaacaagtacagtttttggctgaccacggtggaa
gcagcgcagcagtttcttggcgctcctccgtcagaaacgctgaaggccggacagctgcgg
acccgcgtgagccgctgccaagtgtgcatgaagaatttgtag
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integrated database retrieval system
