Geotrypetes seraphini (Gaboon caecilian): 117360875
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Entry
117360875 CDS
T09159
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04518
Integrin signaling
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117360875 (COL6A2)
04518 Integrin signaling
117360875 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117360875 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117360875 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117360875 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117360875 (COL6A2)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117360875 (COL6A2)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117360875 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
117360875 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
117360875
NCBI-ProteinID:
XP_033801311
UniProt:
A0A6P8QSR8
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All DBs
Position
5:114334630..114501880
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AA seq
1024 aa
AA seq
DB search
MFPKKCLFVLFCMIFGSLHAQNDDDDDVDELSLSVRSPSCSDKTDCPINVYFVIDTSESI
ILQIPPIRSLLDHMKRFIPRFLSKLENEAYQDQVSISWQYGGLHYSDEVKIYSPLTTDKN
AYLANLQKVDYIGRGTFTDCAISSMIDQILSQSADTKAINFAVVITDGFVTGSPCGGMKF
QSERARDAGIKLFAVAASSHLNEQGLKEIANLPHELYRNGYSISTSTDVTEVNEATIDRI
IMTMKHKAYEECYKLNCLEIPGPPGPSGYRGQKGSKGSAGEPGSPGEKGRQGDPGIEGPI
GYPGPKGVPGLKGEKGDYGGDGKKGSSGLAGRNGTDGQKGKRGRIGPPGCKGDLGTKGPE
GYPGEAGERGLNGDEGVKGDPGRTGRSGLPGPHGEKGNKGFQGNSGAPGTPGTKGGKGSP
GTLGPKGEPGRRGDTGSKGNPGTDGAAGEKGDPGPEGPRGLAGEIGIKGNRGERGLPGPR
GAQGPPGEHGRNGSRGDPGDMGERGNSGPAGPKGDRGRPGFSYPGSRGLSGDKGEKGPSG
PMGGRGDPGSKGAPGSKGVTGDPGDPGLTGEPGPRGAHGEPGPAGDSGTPGDPGLTDCDV
MTYVRETCGCCDCEKRCGALDIVFIIDSSESIGYTNFSLEKNFVINVVSRLGSIAKDPKS
DTGARVGVVQYSHEGTFEAIQLNDERIDSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKL
IKETKREKAKVFAVVITDGRHDPRDADTGLQALCGGDVIVNAIGIGDMFHKQQEDETLTS
IACNDDQRVQKMKLFSELVADEFIDNMEELLCPDPQIVCPDLPCQTELAVAQCTQRPVDI
IFLLDGSERIGELNFQKASNFVKEVAEQLTLARSDDDTMNARIALLQYGSENEQEIAFKL
SHNLTDINDALAKIKYLDSSSNIGSAIIYAINNIVLSQPMARRNAELSFVFITDGITGNK
SLAEAVTSMRKQNVVPTVLAMGNDVDMDILLQIGLGDRMAIFRENDYNKLLHPSFFDRFI
RWIC
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccaaaaaatgtttgtttgtcctcttctgcatgatatttggatctctccatgct
cagaatgatgatgacgatgatgttgatgaattatccctaagtgtcagaagcccttcttgc
tcagataaaacagattgtcctattaatgtatatttcgtgattgacacatcggaaagcatc
atcctgcagattccacctatcagaagcctgttggatcatatgaaacgcttcattccacgc
ttccttagtaagctggagaatgaggcctaccaggaccaggtctccatttcctggcagtat
ggaggactccactactccgatgaagtgaaaatctacagcccactcaccactgataagaat
gcttaccttgcaaatctccagaaggtggattatattggtagaggcaccttcactgactgt
gccatctccagcatgatagatcagatcttgagtcagagtgcagacaccaaggcgatcaac
tttgctgtggtcatcactgatggttttgtgactggcagtccctgtgggggaatgaaattc
caatcagagagagcccgtgatgcaggcattaaactgtttgcagtagctgccagcagccac
ctgaatgagcaaggactcaaagagatagctaacttaccccatgaattgtatcgcaatggc
tacagcatttccactagtactgatgtgacagaggtcaatgaggccaccattgatagaata
attatgaccatgaaacataaagcatatgaagagtgctacaagctgaactgtctagagatt
cctggccctcctggcccttcaggatacagaggacagaagggttctaagggtagtgctgga
gagcctggcagccccggagagaaaggaagacagggtgatcctggcattgaaggtcctata
gggtatccaggtcccaagggtgttcctggcctgaaaggtgaaaaaggtgactatggcgga
gatggaaagaaaggctcctctggtttggcaggccgaaatggaactgatgggcagaaggga
aaaaggggacgaattggacctcctggctgtaagggagaccttggaacaaagggcccagaa
ggttatcctggtgaagcaggagaaagaggattaaatggagatgaaggtgtaaagggagat
cctggccgcacaggacgaagtggactcccaggaccccatggagaaaaaggaaacaagggt
tttcaaggaaatagtggggcaccaggcacccctggtaccaaaggaggaaagggatctcct
gggaccttaggaccgaagggagaaccaggccgcagaggagatacaggttccaaaggtaat
ccaggaactgatggagctgctggtgaaaagggagatcctggaccagaggggccaagaggt
ctagcaggagaaattggaattaaaggcaacaggggagagagaggtttgcctggaccaaga
ggtgcccagggtccaccaggtgaacatggaaggaatggttcccggggtgatccaggtgat
atgggagaaagaggaaattctggacctgctggacctaagggtgaccgaggtagacctggc
tttagctatcctggttccagagggctttcaggtgataaaggtgaaaaaggtccctctggt
ccaatgggtggaagaggagatcctggatctaaaggagctcctggttccaaaggagttaca
ggtgacccaggtgatcctggcctgacaggagagcctggtccaaggggagctcatggagaa
cctggtcctgcgggtgatagtggaactccaggggatcctggacttaccgactgtgatgtg
atgacttacgtcagggaaacctgtggttgctgtgattgtgaaaagcgttgtggtgccctg
gatattgtattcattattgacagctcagagagtattggttacaccaacttttctctggag
aagaattttgtcattaatgttgtgagcaggcttggctccatagccaaagaccccaagtct
gatacaggtgctcgtgtgggtgttgtgcagtacagtcatgaaggtacctttgaggctatc
cagttgaatgatgaacgcattgactcactttctagtttcaaggaggcagtgaagcgccta
gaatggattgctggtggcacctggactccctcagccctgcaatttgcctacaacaagcta
atcaaagaaaccaagcgagagaaagccaaagtatttgctgtggtgattacagatgggcgt
catgacccacgagatgcagacacaggccttcaggctctctgcggtggtgatgtcattgta
aatgcaattggcattggggacatgttccacaagcaacaagaagacgagacgctgacttct
attgcttgtaatgatgaccagcgtgtgcagaagatgaaactcttttcagaactggtagct
gatgagtttattgataacatggaggaacttctctgcccagatccacagattgtctgtcca
gaccttccatgccaaacagaacttgctgtggcacagtgtacacaacggccagttgatatc
atattcctgttggatggttcggaaagaattggagagctgaatttccagaaggcctccaac
tttgttaaagaagtcgcagaacagttaactcttgcaagaagtgatgatgataccatgaat
gccagaatagcccttttacaatacggaagtgagaatgagcaagaaatcgccttcaagctg
tcccacaacctgactgatattaacgatgctctggcaaaaatcaaataccttgactcatcc
tctaacatcggatctgccatcatttatgccattaacaacattgtcctgtcacaaccaatg
gccaggcgtaatgctgaactctctttcgtcttcatcactgatggcatcactggaaacaaa
agtctagcagaggcagtgacctccatgaggaagcaaaatgttgtgccaactgtgcttgct
atgggaaatgatgttgacatggacatcctactgcagattggcttgggagacaggatggcc
atttttcgagagaatgactacaataaactattgcaccctagcttctttgaccgcttcatt
cgctggatttgttaa
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