Geotrypetes seraphini (Gaboon caecilian): 117360941
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Entry
117360941 CDS
T09159
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117360941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117360941
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117360941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
117360941
NCBI-ProteinID:
XP_033801499
UniProt:
A0A6P8QVU9
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Position
5:14041198..14079645
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AA seq
432 aa
AA seq
DB search
MCRKVKLHSKGIDLNAVGNINGLPVIEVDLDSFEEKPWRMPGADLSDYFNYGFNEDTWKV
YCEKQKRIQLGLDASPPDSVENTITVQQGGAGNTENEPENNLIAPEFKLDLSPSLLGEWT
KAGPPPNRKLGGAIDVIGGLAGTIRRVEGRRRDKHASEENPIQVLGDHGNLPQGPNQPNS
QPQQKPAQPPPPPQPPPFAPPSSPPPLPLARPPPPHFLHPPPPVANIPPPLHPPGMPPPG
PIPGLFPPPLAPPPALLIPTLGSSSASYNNRQPPSFGYNSRDSGFISYPPVSSPRTPWVP
TVGKGISSPGGGRWEYSRSRRERDRERPPSISEYSNNDEQYRYYSQERSYNYEHEREREY
RRSRDHSREREERHRERRHREKEESSKHKASRRKQHEHEEGEGHRRHKHKKSKRAREDKE
DVVSLSEQDSKD
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtgccgcaaagtcaaactacattcgaaaggaatcgatttgaatgctgtcggaaacata
aatggcctgccagtgattgaggtggacttggattcatttgaagagaaaccgtggaggatg
ccaggtgctgacttatcggattatttcaattacggttttaacgaggacacgtggaaagtt
tactgtgagaagcagaagcgaattcagctgggactggatgcctcgccacctgacagcgtg
gagaatacgataacggttcagcagggaggagcaggaaatacagagaatgagccagaaaac
aacctcatcgcgccagaatttaaattggatttgtcgccgtcgcttcttggagagtggacg
aaggcaggccctcctcccaacaggaagctgggtggagcgatcgatgtcattggcggactt
gcaggcaccatccggcgcgtggaaggaaggcggagggataagcatgcgtccgaagagaat
cccattcaggttcttggagatcatggaaatctaccacaaggcccaaatcagccaaactcc
caacctcagcagaagccagcgcagccacctcctcctccgcagccgccaccgttcgctcct
ccaagcagtccaccccccctgccgctcgccaggccacctccacctcacttcctgcaccct
cctccgcctgtggccaacattcctccacctctgcacccaccaggtatgccgcctccaggc
ccgatcccagggttgtttcctccacctctggctcctccaccagcacttttgattcctaca
cttggcagttcgtctgccagctacaacaacagacaacctccttcgtttggatacaactcc
agagattcgggcttcatcagctatcctccggtctccagtcctcgcacaccctgggtgccg
acagtgggtaaggggataagcagccctggcggaggtcgctgggagtattccagatcaaga
cgagagcgggacagagagagaccgccgtccatcagtgaatatagcaacaacgatgagcaa
taccgttactacagccaggagagaagttacaattatgagcacgagcgagagcgggaatac
cggcgaagtagagaccacagcagagaaagagaggagcgtcacagggagcgcaggcaccga
gagaaggaggagagcagcaaacacaaggcatccaggcggaaacagcacgagcatgaagag
ggtgaaggacacagacgccacaaacacaaaaagagcaaacgcgcacgagaggacaaagag
gacgtggtttctttgagcgagcaggacagcaaagactaa
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