Geotrypetes seraphini (Gaboon caecilian): 117361024
Help
Entry
117361024 CDS
T09159
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117361024 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117361024 (COL5A2)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117361024 (COL5A2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
117361024
NCBI-ProteinID:
XP_033801685
UniProt:
A0A6P8R0R3
LinkDB
All DBs
Position
5:182917351..183223820
Genome browser
AA seq
1486 aa
AA seq
DB search
MIPLHTRNVIICLVLTGQLLTLKGQEEESGDVDIPCKQGDQMYLNRDIWKPLPCELCVCD
NGAILCEKIPCQKVLDCTNSVIPPGECCPVCQSQGGGGSTYSAARGPKGQKGDPGSVPVV
TGIRGRPGPTGPPGSQGPRGERGSKGKIGARGPPGFDGEPGIPGQPGEPGPPGHPSHPGQ
PFQSQMQGGFDEKSGLGSQMGLMPGAMGQVGPRGPQGIPGQQGGVGPQGAPGELGESGSM
GPQGQRGPDGPPGKPGEDGDSGRAGQSGEVGFPGSAGVRGFPGAPGLPGLKGHRGHKGLD
GPKGELGAAGSKGESGPTGPLGGNGPAGPRGMPGERGRLGPQGAPGGRGSNGLAGLAGSV
GPIGLSGSPGFPGIPGSKGEAGPTGARGPEGPQGQRGDTGTQGPIGSQGLSGSDGTDGSN
GAKGPTGSPGLGGPHGLPGPSGSPGPQGSTGAPGIRGSAGDPGVPGFKGEAGPKGEPGPH
GPQGAIGPLGEEGKRGPRGDPGTVGPLGQVGERGAPGNRGFPGSDGLPGPKGAQGERGSG
GASGPKGASGDPGRPGEPGLPGARGLTGNPGVQGPEGKPGPLGATGEDGRPGPPGPIGIR
GQPGGMGPAGPKGHNGDPGKPGEQGNAGVPGQRGTPGKDGEIGPTGPAGPAGLAGERGEQ
GPPGPTGFQGLPGTPGPPGETGKPGDEGVPGDSGAGGPLGPRGERGNPGERGEPGSSGLP
GEKGMAGGHGPDGPKGSPGPSGTAGDAGPPGLQGMPGERGLAGISGPKGDRGGLGEKGSE
GTAGNDGARGLPGPLGPHGSAGPTGEKGEPGPRGLVGPPGSRGTPGSRGENGPIGAVGFA
GPPGPDGQPGVKGETGESGQKGDAGSPGPQGLAGSPGPPGPHGVQGLKGGRGTQGPPGAT
GFPGSAGRVGPPGSTGPIGPAGPLGEPGKEGPLGVRGDPGSHGRVGDRGAAGPAGSPGDK
GDSGDDGQNGPDGPPGPAGTTGQRGIVGMPGQRAERGMPGLPGAAGTPGKQGATGATGDK
GPPGPIGLPGPHGPVGELGPEGLPGIDGTPGRDGAVGPQGDRGESGPAGLPGSQGAPGTM
GPVGAIGEAGQRGDSGSRGPVGPPGRAGKRGFSGPQGPRGDKGDSGERGDRGQKGHRGFT
GLQGLPGPPGPNGELGSTGIPGPFGPRGPPGPVGPSGKEGNPGPNGPLGPPGVRGSVGEA
GPEGPPGDEGPPGPPGPPGLLTAAIDDIIGNYDDSIHEPPPEFTEDEAVADGNKTDPGVH
ATLKSLSSQIETMRSPDGSKKHPARTCEDLKLCHTSKSSGEYWIDPNQGCSEDAIKVYCN
METGETCISANPSSIPRKTWWSTRGSHELKPVWYGLDMNRGSQFVYGDTAITQMTFLRLL
SKEASQNITYHCKNTIGYMDEKTQNLKKAVILKGANDLEIKAEGNNRFRYTVLQDTCTKR
IGNVGKTVLEYRTQNVARLPIIDIAVVDIGSADQEFGIDIGPVCFL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttacacacaaggaatgttataatttgtctagttctaacagggcaacttctt
acattaaaaggacaagaggaagaaagtggagatgtagatataccttgcaagcaaggtgac
cagatgtacttgaacagagatatatggaaacccttaccgtgcgagctctgtgtatgtgac
aatggcgccattctttgtgaaaagattccatgtcagaaagtcttagactgtacaaactct
gtgattcccccaggagagtgttgtcctgtttgtcaaagccaaggaggaggtggtagcaca
tacagtgcagcaagaggaccaaagggacaaaaaggagaccctggatcagtcccagttgta
acaggtatccgagggcgcccaggaccaactggacctccaggctcacaaggaccaagaggt
gaacgaggatcaaaaggaaaaattggagctcgtggtcctcctggatttgatggtgaacct
ggcattccagggcagcctggtgaacctggtcctccaggacacccatcacatcctggccag
ccatttcaatcacagatgcaaggaggctttgatgagaaatctgggcttggctctcaaatg
ggactgatgcctggtgcaatgggtcaggttggaccaagaggacctcaaggtattccagga
caacaaggtggtgtaggaccacaaggagctccaggagaacttggtgaatcgggatcaatg
ggtccacaaggtcaacggggtccagatggtcctccagggaaacctggtgaagatggtgat
agtggtagagcaggacaatctggtgaggttggattcccaggatctgcgggagttcgtgga
ttccctggtgctcctgggcttcctggtcttaagggtcacagaggacataaaggtttagat
ggccctaaaggtgaacttggagcagctggatcaaagggtgaatccggcccaacaggtcct
ctgggaggaaatggtcctgcgggccccagaggaatgccaggggagagaggacggcttgga
ccacagggtgctcctggtggacgtggttccaatggactggctggactggctggatcagtg
ggtcctattggtttatctggctctcctggttttccaggaatccctggttcaaagggtgaa
gctggcccaacaggtgcacgtggccctgaaggtcctcaaggacaaagaggtgacactgga
acacaaggaccaattggatcacaaggcctttctggatcagatggaacagatggttcaaat
ggtgctaaaggtccaacgggatcgcctggtcttggaggcccacatggccttccaggcccg
tctggatctcccggaccccaaggaagtactggtgctcctggcatccgtggctcagcggga
gatcctggagttcctggcttcaagggggaagcaggccccaaaggagaacctggtcctcat
ggccctcagggagcaattgggccccttggtgaagaaggaaaaagaggacctcgtggtgat
ccaggaacagtaggcccactaggtcaagttggagagcgaggtgcacctggtaaccgaggt
ttccctggttctgatggcttgcctggaccaaagggggctcaaggtgagcgtggttcgggt
ggtgcttcagggcctaaaggagcttctggggatcctggtcgtcctggtgaacctggcctt
cctggtgcaaggggtcttactggaaaccctggggtacaaggccctgaaggtaaacccgga
ccattgggagctacaggagaagatggtcgacctggtccaccaggcccaataggaattaga
ggtcagccaggtggtatgggccctgcaggtccaaaaggacataatggggatccaggaaaa
ccaggagaacaaggtaatgctggtgtcccaggacagagaggaactccaggaaaagacgga
gaaattggtccaactggtcctgcaggtccagctggtctagcaggtgaaagaggagagcag
ggccctccaggtccaacaggatttcagggtttgcctggcactccaggccctccaggagag
actggaaagccaggagatgagggtgttccgggagactctggagctggaggtccattaggt
ccacgaggagagcgtggtaatccaggtgagagaggtgagccaggatcctcaggacttcca
ggtgaaaaaggaatggctggtggtcatggtccagatggtccaaagggtagtccaggacct
tctgggactgctggggatgcaggtcctccaggtcttcagggtatgcctggggaaagaggt
cttgctgggatttctggtccgaagggtgacaggggtggtttaggagaaaaaggttcagaa
ggtacagcaggcaatgatggtgcaagaggtctaccaggcccacttggtccacatggatct
gcaggacctactggtgaaaagggtgaacccggcccccgaggattagttggtcccccaggt
tctcgcggtactcctggttctcgaggtgaaaatggtccaattggtgctgttggctttgct
ggtccaccgggtcctgatggtcaaccaggggtcaaaggtgaaactggagagtcaggacaa
aaaggagatgctgggtctccagggccacaaggtcttgctgggtctcctggaccaccaggt
cctcatggtgttcaaggtctcaagggaggtcgaggaacccaaggtccacctggtgccact
ggatttcctggatcggcaggcagagttggacctccaggatccacagggcctataggtcct
gctggtcctctgggtgaaccaggcaaagaaggtcctctaggtgttcgtggtgatcctggt
tctcatggtcgggttggtgacaggggagctgctgggcctgctggtagccccggagacaag
ggagactctggtgatgatgggcaaaatggtccagatggtccacctggtccagcaggaaca
actggacagagagggattgttggtatgcctggccaacgtgctgaaagaggcatgcctggc
cttccaggagcagcaggtacacctgggaaacaaggtgctacaggagcaacaggagataaa
ggacctccgggtcctataggtctacctggtccccatggtcctgtaggtgaacttggtcca
gaaggtcttcctggcattgatggtacacctggccgagatggagccgttggaccccaaggc
gatcgtggtgagtcaggacctgcagggcttccaggttctcaaggtgctcctgggacaatg
ggacctgttggtgctataggggaagcaggacaaaggggtgactcgggttctcgtggtcct
gtaggtccacctggtcgagctggaaaacgaggcttctctggtcctcaaggaccacgtggt
gacaaaggagatagcggagaacgaggagatagaggtcagaagggtcatagaggcttcact
ggtcttcaaggtcttcctggacctcctggcccaaacggggaactaggtagtactggaatt
ccaggaccatttggccctagaggtcctccaggtccagttgggccttcaggcaaagaaggt
aatcctggtccaaatggacctcttggaccacctggtgtacgaggaagtgtgggtgaagca
ggacctgaaggtcctccaggtgatgaaggtccccctggtcctcctggtcctcctggactt
cttacagctgctattgatgacatcataggtaactatgatgacagcatacatgagccacct
ccggaattcacagaggatgaagcagttgctgacggaaacaaaactgatccaggtgttcac
gctactctgaagtccctaagtagtcagattgaaactatgcgcagtcccgatggctccaag
aaacacccagctcgtacttgcgaggatttaaaactctgccacacctcaaaatcaagtggt
gaatattggattgatcccaatcaaggatgctctgaagatgccatcaaagtatactgcaac
atggaaaccggagagacttgcatttcggcaaatccatccagcatacctcgaaaaacttgg
tggagcaccagaggttcacatgagttgaagcctgtatggtatggtcttgatatgaacaga
ggctcacagtttgtctatggagatacagctataacacaaatgaccttcttgcgccttcta
tcaaaggaagcatcccagaatatcacatatcattgtaagaacaccataggttacatggat
gagaagacccagaacctgaagaaagctgtcattttgaaaggtgctaatgaccttgaaatc
aaggcagaaggaaacaatcgatttagatatactgttctacaagacacctgcacaaaacga
attggcaatgtgggcaagactgtccttgaatacagaacacagaatgtggcacgattaccc
attatagatattgccgttgtggacattggcagtgctgaccaggagtttggaatagatatt
gggccagtttgctttttgtaa
DBGET
integrated database retrieval system
