Geotrypetes seraphini (Gaboon caecilian): 117361085
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Entry
117361085 CDS
T09159
Symbol
FN1
Name
(RefSeq) fibronectin isoform X1
KO
K05717
fibronectin 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04810
Regulation of actin cytoskeleton
gsh04820
Cytoskeleton in muscle cells
gsh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117361085 (FN1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117361085 (FN1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117361085 (FN1)
04810 Regulation of actin cytoskeleton
117361085 (FN1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117361085 (FN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117361085 (FN1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117361085 (FN1)
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117361085 (FN1)
04990 Domain-containing proteins not elsewhere classified [BR:
gsh04990
]
117361085 (FN1)
Membrane trafficking [BR:
gsh04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
117361085 (FN1)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
117361085 (FN1)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117361085 (FN1)
Domain-containing proteins not elsewhere classified [BR:
gsh04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
117361085 (FN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
fn1
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
fn2
Fn3_Dep-1_2nd
NDNF
DUF4959
FN3_Tor_3rd
Motif
Other DBs
NCBI-GeneID:
117361085
NCBI-ProteinID:
XP_033801829
UniProt:
A0A6P8QWS7
LinkDB
All DBs
Position
5:162936836..163297864
Genome browser
AA seq
2477 aa
AA seq
DB search
MFRSPLTGLLIALCLGSALSSTPEAAKQRRQTPPGQQHVGLADPNQNRQECDDNGKRYQI
NQQWERTYLGNVLVCTCYGGSRGFNCESKPELEETCFDKYTGTTYRVGETYERPKENMIW
DCTCIGAGRGRISCTIANRCHEGGQSYKIGDTWRRPHEAGGSMLECVCLGNGKGEWTCKA
LAEKCYDNAAGTSYVVGQTWEKPYQGWMMVDCACLGEGSGRITCTSRNRCNDQDTKTSYR
IGDTWSKTDTQGNLLQCICTGNGRGEWKCERHTSVQAVASGSSTFTNVRTAVYQPQPEPY
GHCVAESGVVYSLGMKWLKTQGNNQMLCTCLGNGISCEETTETQTYGGNSNGESCVLPFT
NGDKTFYSCTTEGHQDGKLWCSTTSNYEQDQKYSFCTEQNVLVQTRGGNSNGALCHFPFL
YNNRNYTDCTSEGRKDSMKWCGTTANYDVDQKFGFCPMAAHEEICTTNEGVMYRVGDQWD
KRHDLGHMMRCTCVGNGRGEWNCVAYSQLKDQCIVDGVTYDINQVFNKRHEEGHMMNCTC
FGQGRGRWKCDAVDQCQDSETRKFYQIGDSWEKRVHNVRYQCYCYGRGIGEWHCQPLQTY
PGGAGPVQVIITENANQPNSHPIQWNAPQPSHIVQYILRWKPKNKQVAWKQVTIPGHLNS
YTISGLKAGLIYEGQLFSLLHYGQREVTNFEFTTTTTTLVSNNTLTGETTRLPPMVATSE
SVTEITSSSFLVSWVSASDTVSGFRIEYELSEDGTTKQYLDLPSTATSVNIPDLLPGRRY
NIQVYQITEEGETDLILSTSQTTAPDAPSEHAVDSVDDSTITISWARPQAPITGYRIVYT
PSVEGSSTELNLPDTATSVTISELQPGVQYNITIYAVEENQESTPIFIQQETTGVVKKVP
VPSPTDLQFLDVTDVKIRATWTPSEGDVTGYRVLVVPADLPDTQGLHLPISRNSFAEITE
LQPGTTYSFKIFAVYHGQESRPLVGEQTTKLDAPTSLRFVNVTESSVIVVWEPVHSKIDG
FLLSIGLTRGERPKQFHIAPSLTQYTFNNLLPGKEYSVSLIGVKGHQQSNKVTGVFATLE
PVSSIPPYNAEVTDTTIVVTWTPVPRIGFKLGVRPSQGGEAPREVISESGSIVISGLSPG
VEYTYSLSVLTDNQERGGSITKTVVTPLSPPTNLHLEPSPDSGTLTVSWKRSTSPGITGY
RITTAPTSGQHSITLDEEVGEKQTSWTFENLSPGVEYNVSVYSVKNDLESEPISKIITQE
VPQLTDLTFVDVTDSSIELRWTPLTSPSITGYHITVVAAGESIPVYEDTLGPTEGYYKVT
GLEPGIDYEIRVTTLIHGGQSTPTTLTQQTAVPPPTDLRFTNVGPDNLRVTWSPPASIDL
SSFLVQYSPAKNKEDVVELTISPSDNMVVLTDLLPGTEYLISVYSVYEEHKSTPLRGVQK
TGLDSPTGIDFSDTTPNSFTVYWIAPRSSFTAYKIRYQLESGDTRAREERVAPSRNSITL
TGLSPGSEYVVSIYAVNGNEESLPLVGQQATVSDTPTDLEIISSTPTSLTISWDAPAVSV
RYYRITYSETGGQGHVKEFTVPGSMSTATIRDLKPGADYTVTVYAVTGRGDSPASSKPVT
VQHRTEIDQPTRLLVTDVQDRSIHVSWVPSSAPVTGYRITSTPRNGQGSPITRVVSADQT
EMTIEGLQPTVEYVVKVYAQTPRGESLPLVETAVTNLDRPKGLTFTEVDVDSIKLAWESP
EGQVTKYRVTYSSPEDGIRELVPAPDGEDDTAELHGLRPGSEYTVSVVALHDEMESQPLT
GTQITAIPPPKNLNFGQVTPTSVIVSWDAPAMKKLTGYRVRVNPKEKTGPMKEINLSPDS
TSAAVTGLMVATKYDINVYSLMDSLISIPLLGSFTTLENVSSPRRPRVTDVTETTITIMW
RTKTETITGFQIDAIPTNGQNPIQRTIGPDVRSYTITGLQPGTDYKIYIYTLNENARSSP
VILDASTGIDSPSKLRFLTATSNSLLFSWLPPRASLTGYIIKYEKVGGPTRELFPRPPAD
ATEATLTNLEPGTEYIIQIIAFRHTQKSEPLTGRKKTDELPKLVTLPHINHRGPEILDVP
SGVDSTPFISQTRFDNGNGIQLPGTSGQQSVGHQGLPVFIEEHGFRRTTAPTTAVPVRHV
PGRQIPNVEETISRPLPVHRTDERPSYPHGFGPHHNDSRGQEASSQITISWRPLLETTEY
LISCHLVGHDEQLPVKFKVPGTSNTARLSGLINGATYNIIVEALKGQSKHKVLEEMITVG
NTAVSEDVSKPLEDTCYDTSTGSFYTIGEEWERMSESGFRLWCKCLGFGSGHFRCDSSKW
CHDNGVNHKIGAKWDRQGENGQMMSCTCLGNGKGEFKCEPHEATCYDDGKMYSVGEQWQK
EYLGAICSCTCYGGHRGWRCDNCQRPGAETLPDGGTGHTFTHVSQRYQQNANLNMNCPIE
CFMPLGIQADVEPKGGK
NT seq
7434 nt
NT seq
+upstream
nt +downstream
nt
atgttccgtagccctttgacagggctgttgatagccttgtgcttgggatcggcacttagt
tctacccccgaagcggcaaaacagagaaggcaaacgccgccagggcagcagcatgtggga
ctggcagatccgaaccagaatagacaggaatgtgatgacaatggaaagcgctatcagatt
aatcagcaatgggaaaggacttacctagggaacgtattggtctgcacctgctatggagga
agcagagggtttaactgcgaaagcaagcctgaacttgaagaaacttgcttcgacaagtac
actggaaccacctatcgtgtgggggagacatacgagcgtcccaaagagaacatgatttgg
gattgtacttgcatcggcgctgggcgaggcagaatcagctgcaccattgcaaatcgttgt
catgaaggagggcagtcctacaagattggcgacacctggcgcagaccccatgaggcaggt
ggcagcatgctggagtgtgtgtgtcttggcaatgggaaaggtgaatggacttgcaaagct
ctagcggagaaatgctatgacaacgctgctgggacctcatacgttgttggccagacctgg
gagaagccttatcaaggctggatgatggtagactgtgcttgcttaggagagggcagcgga
cgaatcacatgtacttctagaaataggtgtaacgatcaggatacaaaaacttcctacaga
attggagatacctggagcaagactgatacccaagggaacctgttacagtgcatttgtact
ggaaatggcagaggagaatggaagtgcgaaagacatacatctgtacaggctgttgcctct
ggatccagtaccttcaccaatgttcgtactgcagtgtatcaaccccagcctgagccttat
ggccactgtgtagcagagagtggtgtggtgtactctttgggaatgaagtggttgaagacc
caaggcaacaatcagatgctctgtacctgtcttggaaatggaatcagctgcgaagaaaca
actgagacccagacatacggtggaaattctaatggagagtcctgtgtcttgccttttaca
aacggtgacaagactttctactcctgtaccacggaaggacatcaagatgggaaactgtgg
tgtagtacaacctctaactatgaacaggatcagaagtattctttctgtacagaacaaaat
gttctagttcagacccgaggtggcaactcaaatggagcactgtgccattttccattcttg
tataacaaccggaattacacagactgcacctctgagggacggaaggatagcatgaaatgg
tgcggcactacagccaactacgatgttgatcagaagtttggcttctgccccatggcagca
catgaggaaatttgtaccactaatgaaggagttatgtaccgtgttggagatcagtgggac
aagcgacatgatctcggccacatgatgagatgcacatgcgtagggaatggacgtggagaa
tggaactgtgttgcatactcccagctcaaagatcagtgtattgtggatggtgtcacttat
gatattaaccaggttttcaacaaacgtcacgaggagggacatatgatgaactgcacttgc
tttggtcagggccgaggcagatggaaatgtgatgctgttgatcagtgccaggattcagaa
actcgtaaattttaccagattggagattcctgggagaagagggttcataatgttcgatac
cagtgctactgctatggacgagggattggagagtggcattgccagcctcttcaaacttat
ccaggtggagctgggcctgtgcaggtcattatcacagagaatgccaaccaaccgaactca
caccccatccagtggaatgcacctcagccctctcatattgtccaatacattctccgttgg
aagccaaaaaataaacaagttgcctggaagcaggtaactatacctggacatctgaattcc
tatacaatctcgggcctaaaagccggtttgatttatgaaggtcagctcttcagtttactg
cattacggtcaaagagaggtcacaaacttcgaatttacaaccactaccaccactctagtg
tccaataatacacttactggagaaactacacgccttcctcctatggtggcaacttctgag
tctgtgacagaaatcacctccagtagctttctggtctcctgggtttctgcatcagacaca
gtgtcaggattccgtattgagtatgagctcagtgaagatggaactacaaagcagtatctt
gatcttcccagcacagctacttctgtcaatatccctgatttacttcctggtcgcaggtac
aatatccaagtctaccagataactgaagaaggagaaactgatttgatcttgtcgacatct
cagacaacggcaccagacgcgccctctgagcatgctgtagacagtgtggatgacagtacc
atcaccatcagttgggccagaccacaagctccaattacaggctataggatagtctacaca
ccatctgtggaaggaagcagcactgaactcaacctcccagacacagctacttctgtgacc
attagtgagttgcagcctggtgttcagtataatattactatatatgctgtggaagaaaac
caagaaagcaccccgatcttcatccagcaagaaacaactggtgtggtaaaaaaagtgcct
gtaccttccccaacggatctgcagtttttagatgtaacggatgtcaagatcagggcgaca
tggactccgtcggagggtgatgtgactggttatcgtgtgttagtggttcccgctgatctc
cctgatactcaaggactccacctgcctatcagcaggaactcttttgctgagataactgag
ctacaacctgggacgacctactctttcaagatctttgcagtgtatcatgggcaggagagc
aggccattggtgggagaacaaacaaccaaacttgatgcacccacaagtctcaggtttgtc
aatgtgacagaatcttcagtgatagtggtgtgggagcctgtacattctaaaattgatgga
ttcctattgagcattggtctcacaagaggagagcgacccaagcaattccatatagcaccc
tcactgacccagtacaccttcaataatctgcttcctggcaaagaatatagtgtctctctg
ataggtgtgaaaggacatcagcaaagcaataaagttactggagttttcgctaccttggaa
ccagtgagttctattccaccctacaatgcagaagtgacagatactacaattgttgttacc
tggacacctgtgccaagaattgggtttaagttgggcgtgaggccaagtcaaggaggagag
gctccacgagaagtgatttctgagtctggtagcattgtcatctccggtttgagccctgga
gtggagtatacttacagcttatctgtcctgacagataaccaggagaggggtggttccatc
accaagactgtagtaacacctctgtctccaccaaccaaccttcacttggaacccagcccg
gacagtgggacgttgactgtctcttggaagagaagcacgtctccaggcattactgggtac
cgaattacaactgctcctactagtggtcagcatagtatcactttggatgaagaggttggt
gaaaagcagacttcctggacctttgaaaacttgagtccaggagtagagtacaatgtcagt
gtgtactctgtcaaaaatgacctggagagtgagcccatctcaaaaataatcacacaagag
gtgccccagctcactgacctaacctttgttgatgtaactgattcaagcatcgaattgagg
tggacaccactaacttcccccagcattactgggtaccacatcactgtagttgcagcagga
gaatccattcctgtttatgaagacactttgggtcccacagaaggatactacaaagtcaca
gggctggagcccggcatagactatgagatccgcgtaaccactctcattcacggtggacag
agtacccccaccacactgacacaacaaacggctgtccctcctcccactgatctacgcttt
actaatgtgggccctgacaatctacgtgtgacctggtctccaccagcctccattgacctg
tccagttttctggtgcagtactcgcctgcaaagaacaaagaagatgttgtagaactgaca
atttccccttcagataacatggtggttctgacagatctcctgccaggtaccgaatatttg
atcagtgtctacagtgtatatgaagaacataagagtacacctctgagaggagtacagaag
acaggtcttgattctccgactggcattgacttttctgatacaacccccaactcattcacg
gtctattggatagctccacgttcctccttcactgcctacaaaattcgttaccagctggag
agtggcgataccagagccagggaagagcgtgtggcaccctctcgtaactccatcaccctg
actggattgtctccagggtctgagtacgtggttagcatttatgctgtcaatggcaatgaa
gaaagcttgcctttggttggccagcaagctacagtttcagacactcctactgacttagaa
attatctcctccacccctactagtctgacaatttcctgggatgccccagcagttagtgtc
agatactacaggataacctattcagaaacaggaggccagggtcatgttaaggagttcact
gtccctggatctatgtcaacggctaccattcgagatttgaaacctggtgcggactacaca
gtcaccgtgtatgcagtaactgggcgtggagatagccctgccagcagcaaaccagtcacc
gtccaacaccgaacagagatagatcaaccaactcggttgctagtgactgatgttcaagat
cgcagcattcatgtcagttgggtaccctcttctgccccagtgactggctacagaataaca
agtactcccagaaatggtcaaggatcccccataacgcgtgttgtatcagcagatcaaaca
gaaatgactattgaaggcctgcagcctacagtagagtatgtggttaaggtctatgctcag
accccaagaggagagagcctaccattagttgaaactgcagttaccaaccttgaccgccct
aaaggactgacattcacagaggtggatgtcgattccatcaaacttgcttgggaaagccct
gaggggcaagttaccaagtacagggtgacttactcaagtccagaggatggaatccgtgaa
ctagtgcccgcaccagacggggaagatgacactgccgagctgcatggcctcaggcctggt
tctgagtacacagttagtgttgttgctttacatgatgagatggaaagccagcccctgact
ggaacacaaatcacagccattcctcctccgaaaaacctgaactttggtcaagtgactcca
actagtgtcatagttagctgggatgcccctgccatgaagaagctcactggatatcgtgtg
cgagtgaatcccaaggagaagactggaccaatgaaagaaataaacctctctccagacagc
acctctgctgcagtgactggattaatggtggcaactaaatatgacatcaatgtgtatagt
ctgatggactccctgatcagcattcctttattggggtcattcacaaccttagaaaatgtc
agctcccctcgtagacctcgtgttacagatgtcactgagacgacaatcacaattatgtgg
cgtaccaaaactgaaactatcactgggttccagattgatgctataccaacaaatggacag
aatccaatccagagaacaattggccctgacgttcgaagctatacaattactggtttgcag
ccaggcactgattacaagatctatatttatactctgaatgagaatgcccgcagctctcca
gtaatcctggatgcttcaacaggaatagactctccatccaaattgcgcttcctcacagct
accagcaactccttactcttttcctggctgccaccccgtgctagtctgactggctatatt
atcaaatatgagaaggttggaggaccaaccagggagctgttccctcgccctcctgctgat
gccacggaggccacacttacaaacctagagccaggaacagagtatatcatccagatcatt
gcttttaggcatacccaaaagagcgagccacttactggacgaaaaaagacagatgagctt
cctaagctggtaactcttccacacattaatcaccgtggccctgagatcctagatgttccc
tccggtgtggacagtacacctttcatctcacagaccaggtttgacaatggaaatggtatc
caacttccaggtactagcggtcagcaatcagttggacaccaaggactgccggtatttatt
gaggagcatggatttagaaggaccactgcaccgacaacggcagtcccagtgaggcatgta
ccaggtcgacagataccaaacgtggaagaaactattagtaggccattaccagtacacaga
acagatgaaaggccttcttatcctcatggatttggtcctcaccataatgacagcagaggt
caagaagcctcgtctcagatcaccatctcttggagacccttgctggaaaccacagagtac
ctcatttcttgccatctagttggccatgatgaacaactacctgttaagttcaaggttcct
ggaacttccaacacagccagactgagcggcctaatcaatggagcaacttacaacattata
gtggaagcactgaaaggacaaagcaaacataaagttctggaagagatgattacagttggt
aacaccgcagtgtcagaagatgtgtccaagccattggaagacacgtgctatgatacttcc
actggctccttttatactattggagaggagtgggaacggatgtctgaatctggctttagg
ctctggtgtaaatgcttgggctttggcagtggtcatttcagatgcgattcgtctaaatgg
tgtcacgacaatggcgtaaaccataagattggagctaaatgggaccgccaaggtgagaat
ggacagatgatgagctgcacttgtcttggaaacgggaaaggagagtttaagtgtgaacca
catgaagcaacatgctatgatgatggaaagatgtacagtgtaggagaacagtggcagaag
gagtatctgggagctatatgttcctgcacctgctacggagggcatcggggttggcgctgt
gacaattgccagagacctggtgccgaaaccttgcctgatggtggtaccggccacactttt
acacatgtttcacagagataccaacagaatgctaatttgaatatgaactgccctatcgaa
tgcttcatgcctttaggcattcaggcggatgtagaacctaaaggaggaaaataa
DBGET
integrated database retrieval system
