Geotrypetes seraphini (Gaboon caecilian): 117361334
Help
Entry
117361334 CDS
T09159
Symbol
LIMCH1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gsh04990
]
117361334 (LIMCH1)
Domain-containing proteins not elsewhere classified [BR:
gsh04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
117361334 (LIMCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
117361334
NCBI-ProteinID:
XP_033802409
UniProt:
A0A6P8QY87
LinkDB
All DBs
Position
1:complement(221301929..221929010)
Genome browser
AA seq
1810 aa
AA seq
DB search
MASAGAQLEDIRHLQESPSDAAFGEAQKWIEQVTGRSFGYKNFRAGLENGVLLCELLNAI
KPGLVKKINRLPTPIAGLDNVILFLRGCKELGLKDSQLFDPSDLQDTSARVTVKSTDCNR
KLKNVLVTIYWLGKAANNCTSFNGATLNLKEFEGLLTQMRKETEDIESPKRSIRDSGYID
CWDSERSDSLSPPRHGRDDSFDSLDSFGSRSQQTPSPDVVLRGSSDGRGSDSESDFPHRR
IPDMKKDDMLTRRTSHGEIKTFVPFNQYLPNKTNQTAYVPAPLRKKKAEREEYRKSWSTA
TSPLGGERPFSENHPETIMEEQSEALQCEKDEAVQEDLRGEPATSKIENNGSLDVQSSAG
TIKGIQADECEAKEVENRKLKIREQAGIKVMSAAKRFESPKQVDHESETPDIILRKENAF
LTHYAEPSEDEEEDRIPDIEKDDLATRKVRMDQTKTTPGYNHVSSGSYTKKDGKWEDTQK
PSPSELLKIHPCTSKDYGPAVGLKSILTQKKGSHLESEAPEFEEEEQEKVPDIQRDDLAN
RKNQYSHSRPQEGKNFINASITEKDLKTWERLKLSTEASSDETIKTAEQACEPVLAAAVQ
TTTPVDDDFAVRKARAHRKGSSPRQKFVHFGPVTEIDQQRWTKLSIVKPLAGNGSDEEAN
GESSNSFVHGELLSSASSHKQSERKADDPVVTEDSSELAWPGTDPGPRITPVSAVSQEQT
TSKFASQSEDIEQEEEKLQFPDSTRDDMMVRRLGTFRKQTDSDYHQFVPASVFPLPKQKD
VFKRRVNIEQKAASSGLPLTGKVAHYRRTPSPDLITCMVAKEERPQELKCQHQDSSETQI
TTRLPEPDYDNMATTSTGSVDKPMRVTSSQVLPAVYSKQQEEEEEEIIQGLSKSEKVKRT
MASSSCLPNMQLRAPSPLRVERDRASGQKEGGECKEEYLPAFEEESRATRQALTQPNQSE
DRVLQGPELQDVPEEKDKVVLRFSPRSALSDDMESMSMFDMRDEEEAAIQPHSRAYQDEL
QNVNSLLKEEDDKWQDDLARWKSRRRSASQDLIKKEEERRKMEKVLSGEYDLSERRKSIK
TYKEIVEEKERRERELHEAYLKAKSREEAEMVLQKYIEKFTISEAILERLQMPKLLERRH
SVESNSLSPPKETSPMKYLRQQSLPVPKFTATFQATIASPNESETAVLTDFTSPNKATVA
KAVPVLTPKPYSPPKNKQGLKTFKVDGRETMNGEVCNGTLEKERCATFAPSPDSSLVFEG
VAKVDESPLELKQDTTHVELTLKRPKSNSVCRELTDTIQEETEGANQREESASEMSMQRP
NLGHASQEGLRQSEKTSGHFGTAVSSLEFTPIYHTKEYIAKKKDENRGEKETDVPVTEQV
VTSKACNQEDSRAFEYFKTGAEICQDQQGSPHLASVPLRIRNSWRRSQFFSQSVDSNSSE
EKSVLIPPENASRRCNLWSWDPEEERKRQERWQQEQERMLQERYQKEQEKLKEEWEKAQK
EVEEEERKYYEEERKIIEDTVVPFTTTSSFADLPASSSSSLEAQMNRNFQSLERPLPKQE
PEQELKESQMQVAESSSRVGQAKEKKTEVVREQQQDLMWDLDEGSFHRSQEGEMQKEKRS
VNKMIAGHQESLSQKMSEQRQQRLMTRQDLPAKMNLNLLPDASWDHQLMTKEPSCASNDV
SLKTPPLDYGLGHQAYSLGGIKRTASPESIRAGLASPSSPSQLCQSPNRYQRSVSGKKLC
SSCGLPLGKGAAMIIDTLNLYFHIQCFKCGICKGELGDVTTGTDVRIRNGLLNCNDCYIR
SRTAGQPTPL
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgccggcgcgcagctggaagacatccgccacctgcaagaatccccttcggac
gcagccttcggcgaggcgcagaagtggattgagcaagtaacgggcagaagttttggatac
aaaaattttcgggctggattagaaaatggtgtccttctctgcgagctgctgaatgctata
aagccaggacttgttaaaaagatcaacagacttccaactcccattgcaggattggacaac
gtcatcttatttttgagaggctgcaaagaactcggtcttaaagattctcagctttttgac
ccaagtgacctccaggatacatcagcccgagttactgtcaagagcacagactgtaaccgg
aagctgaaaaatgtattagtcactatttactggttggggaaagctgcaaacaactgtact
tcatttaacggagcaactctaaaccttaaagagtttgaaggactattgacacagatgaga
aaggaaacggaggatattgaaagccccaagcggagcattcgggatagtggttatatagac
tgttgggactcggagcgaagcgattccctttctcctccacggcatggcagggatgattca
tttgacagtttggattcatttggctctcggtcacagcagacaccatccccggatgtggta
ctccgaggaagcagtgatgggagaggaagtgactcagaatcggacttcccacacagaagg
atacctgacatgaagaaagacgatatgctaacaaggcgaacgtcacatggcgaaattaaa
acttttgtgccttttaaccagtacctcccaaataaaactaaccaaactgcctacgtacca
gctcctcttcggaaaaagaaagcagaaagagaagagtatcgcaagagctggagcactgcc
acatcgccactgggaggagagcggccttttagcgaaaatcacccagaaactataatggaa
gaacagagcgaggcattacaatgtgaaaaggatgaggcagtccaagaggaccttagagga
gagccagcaacctcgaaaatagagaataatgggagcttagacgtccagtcttctgcaggt
accatcaagggaattcaagcagatgaatgcgaagcaaaagaagttgaaaatcggaagtta
aaaattcgcgagcaagctggtattaaggttatgtcagcagcaaagcgcttcgaaagtcca
aagcaagttgatcatgaaagcgaaacacctgatatcatccttcgcaaagagaatgcattt
ttgacacattatgctgagccttctgaagacgaggaagaggatagaattcctgatattgag
aaggatgaccttgctacgagaaaagtgagaatggatcaaaccaaaaccacaccaggatat
aatcatgtttccagtggttcttacactaaaaaagatggtaaatgggaagatactcaaaaa
ccatcaccgagcgagctactgaaaattcacccttgcacaagtaaggattatgggcctgca
gtggggctgaagtctatcttaacacagaaaaaaggctcgcacctggagtcagaagcacct
gagtttgaagaggaggagcaggagaaggttcctgacatccaaagagatgacctggcaaac
cgaaagaatcaatacagccattcccgcccacaagagggaaagaatttcataaacgcctcc
ataaccgagaaagatttaaaaacatgggaaaggctcaaattgtcaacagaagcaagttct
gacgagaccatcaaaactgctgagcaggcctgtgagcctgtactagcagctgctgtgcaa
acgaccacaccagttgatgacgactttgctgtccgcaaggcaagagcgcacagaaaaggg
agcagccctaggcagaagtttgtgcactttgggcctgtgactgagattgaccaacagaga
tggacgaagcttagcatagttaaacctttagctggtaacggatcagacgaagaggcaaat
ggtgaaagtagcaacagttttgttcatggtgaactcctaagcagtgcttccagccacaaa
cagtctgagaggaaagctgatgaccctgttgtgacagaggattccagtgagttggcttgg
cccggtactgatccaggtcctagaattacccctgtgtctgctgtctctcaagagcagact
acaagcaaatttgcaagccagtctgaagacattgagcaggaagaggaaaaactgcagttt
ccagattctactagagatgatatgatggtgagaaggttaggcactttccggaagcagact
gattcagactaccaccagtttgttccagcctcggtatttcctctgccaaagcaaaaagat
gttttcaagaggagagtgaacatcgagcagaaagctgcaagcagcggcttgccattaact
ggcaaggttgcacattatcgtaggacaccttcacctgacttgattacctgtatggtagcg
aaagaagaaaggcctcaagagctgaaatgccagcatcaagacagtagtgagacccagatc
acaacaaggctaccagagccagattatgacaacatggcaaccacaagtactggatctgtt
gataagccgatgagggtcacctctagccaggttcttcctgctgtatattctaaacagcag
gaggaggaagaggaggaaattattcagggtctttcaaaatctgaaaaagtaaagcgaacc
atggcatctagctcctgtttaccaaatatgcaacttcgagccccttcacctctcagggtt
gagagggatagagcttcaggacaaaaagaagggggagagtgcaaggaagagtatctaccc
gcattcgaggaggagagcagagccactcgccaggctctcacacaacctaaccagagtgaa
gatcgggttctccagggtccagaactccaggacgttcctgaagaaaaagacaaagtagtg
ctgagattcagcccaagatctgctctgtctgatgacatggagagtatgagtatgtttgac
atgagggatgaagaagaagcagcgatacaaccccacagcagggcgtaccaggatgaactg
cagaatgtgaacagtctactcaaagaagaagatgataaatggcaggatgacttggcccga
tggaaaagtcgcaggcgaagtgcatctcaagacctgatcaaaaaagaagaagaaaggaga
aaaatggaaaaagtgctcagcggggagtatgatctgtcagagcgaaggaaaagcatcaaa
acctacaaagaaattgtggaagagaaagagcgccgagagagagagttacatgaagcatac
ttgaaggccaagtcacgtgaagaggcagagatggtactacaaaagtatattgagaaattc
actattagtgaagctattcttgagcgcttgcagatgccaaaacttctggaaagaaggcat
tccgtggagtccaattctttatctccaccgaaagaaaccagtccaatgaagtacctgagg
caacagtcgctgcccgttccaaaatttactgctacctttcaggcaaccatcgcttctcca
aatgagtcagaaacagctgtattgacagacttcacgtcgccaaacaaagccactgtcgcc
aaggcagtgccggtgttgactcctaagccttactcaccgcccaaaaacaaacagggtttg
aagacattcaaggtagatggaagagagactatgaatggggaagtctgtaatggaaccctg
gaaaaggagagatgtgcaacatttgctccatcaccagacagctctctggtatttgaaggt
gtggccaaagtagatgagtctccattggaactgaaacaggacacaactcatgtagagctg
accctgaagagacctaaatctaatagtgtatgcagagagctgacggacactatccaagaa
gaaactgaaggagcaaaccagagggaagaatctgcttctgaaatgtctatgcaacggcca
aatttgggacatgcttcacaagaaggtttgaggcaatctgagaagacgtcgggacatttt
ggtactgctgtgagcagtttggagttcactcccatttaccatactaaggaatatattgct
aaaaagaaagatgagaacagaggagagaaggaaacggatgtgccagttacagaacaggta
gtgacatcaaaagcctgtaaccaggaagacagcagagcatttgagtatttcaagaccgga
gctgaaatttgccaagatcaacaagggtcacctcaccttgccagtgttccgcttaggatt
cggaactcctggcgacgctctcagtttttttcacagtcagtggattccaatagcagcgag
gagaagtctgtcctaatacctcctgaaaatgcatcaagacgttgtaacttgtggtcatgg
gacccagaagaagagcgtaaacgccaggagagatggcagcaggagcaggaacggatgctt
caggagagataccagaaagagcaggaaaaactgaaagaagaatgggagaaggcacagaag
gaagtggaagaggaggaacgtaaatactatgaggaggagcggaagataatagaagacact
gtggttccattcaccacaacctcaagctttgctgatcttcctgcctccagctcttcttct
ttggaagcccagatgaacaggaattttcagtcactcgagaggccattacccaagcaggag
cctgaacaagaattgaaggaaagtcagatgcaggtggcagagtcaagctcaagagttggt
caagcaaaagaaaagaaaacagaggtcgtgagagagcagcagcaagatttaatgtgggac
ttggatgaaggatcatttcacaggagccaagaaggtgaaatgcagaaggaaaagaggagt
gtaaataaaatgatagcaggacatcaagagtcactatctcagaaaatgagtgagcaaaga
cagcagaggttgatgaccagacaagacttgcctgctaaaatgaacctgaatcttctccca
gacgcttcttgggatcatcagttaatgaccaaggaaccttcctgtgcttcaaatgatgtc
agtctgaagacacctcctctggattatggtcttggtcaccaggcttattcattaggtgga
atcaaaagaacagcgtctccagagagtatcagagcggggctagcatccccatcttctcct
tcacagctatgccagtcacccaacaggtaccaaagatctgtcagtggaaagaaactgtgc
tctagctgtgggcttcctcttgggaaaggagctgctatgatcattgacaccctgaatctt
tatttccatattcagtgctttaagtgtggaatttgtaaaggagagctaggagatgtgacc
actggaacagatgtcaggatccgcaatggtctattgaactgtaatgactgttacatccga
tccagaactgctggccagcccacgccattgtga
DBGET
integrated database retrieval system
