Geotrypetes seraphini (Gaboon caecilian): 117361377
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Entry
117361377 CDS
T09159
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117361377 (PMS1)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
117361377 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_WDHD1
HATPase_c
HMG_box_2
DUF7486
IL5
Cas5fv_helical
Motif
Other DBs
NCBI-GeneID:
117361377
NCBI-ProteinID:
XP_033802498
UniProt:
A0A6P8RFL5
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Position
5:169684118..169815351
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AA seq
941 aa
AA seq
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MKQLSAATIRLLSSSQVITSVVSLVKELVENSLDARATSIDVKLENYGFDKIEVRDNGDG
IKAADVPVMAVKHYTSKINSHEDLQSLQTYGFRGEALGSICCIAEVSVTTKTADDDFSTQ
YVLDSYGHVTSQKPSHLGQGTTVTVHKLFKNLPVRKQFYSTTKKCKEEIKRVQDLLMAYG
IIKPNLRIIFTHNKAVIWQKTRVSDHKMALLSVLGTAVMSSMVPFQHQCEDSEVLLSGFL
PKPDSNHTLTSLSSPGRSFIFINQRLVYQKDILKLIRLYCNLTFSKDPIQSYPIFFISII
IPSSAVDVNVTPDKTQVMMQNKESVLRAVENVLMSLYGNLPGILPVENNNTDVSSPDMYV
NKTGLTDVLVNEAIPSGNDELKTHTSFFSVSNDMQNVEHGKNKEICLRNQVHCNDNPPGL
FDKNEVSGIEKMRSDIFQAGSINNFSSGGDSQSDYKVTFTMDDASLMDMQPHRDQGSPLG
AKQINEAERLKERTIPKDISEICADNWSRGNVFKNSEGKNLEPVKILMPSIDRDMCHNES
DKSQPLNSTQNYCSKNPKTSNVINEKFGQITAYNLISNHVIRKPKSANTLFMQEYRSRIL
ADNPKASLENIAAEAENLWIKLSEEEKRKYEEKAVKDVKRYSVQAQKALNKSTYQPVKEV
EKGLQVTTAKGVPRKNRLKAALSNQQILDKMFQSQIEKKKEPMKIVQVPFTLSTLKGQLG
RLSKKCSSDGEELCFISKLGFPGAWIIASEKKIMLLNPYRVEEALLFKRLLDNHKIPAET
LEKSIVLTDSLLGGSHYMDVLYTLQKDSPKLNGSTYFSDLRLVGNGFQIKVVSGTACKEN
QLEIEGMANCLPFYGISDLKEILNAVISKNAKELSQCRPLKVINYLEGEAVRLSRQLPLY
LSKEDVQDTICRMNQQLGNENKGCVHGRPFFYHLTDIPEVK
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctgtcggctgcaaccatccgcctgctttctagctctcaggtcatcacatcc
gttgtcagcttggtgaaggagctggtggagaactctcttgatgccagagctactagcatt
gatgttaaactggaaaactatggatttgataagatagaagtgcgagacaatggtgatgga
atcaaagctgcagatgtgcctgtcatggcagtaaagcactatacttctaaaattaatagc
catgaagacctccagagcctccagacatatggtttccgaggtgaagccttaggttctatc
tgctgcatagcagaggtctctgtcacaacaaaaaccgctgatgatgattttagcacccag
tatgttttggatagttatggccatgttacttcccaaaagccttctcatcttgggcaaggt
accactgttacggtgcataagcttttcaagaatctacccgtaagaaagcagttttattca
acgacaaaaaaatgtaaggaggagatcaagagagtccaggatttgctgatggcttatgga
ataataaaaccaaatttaaggatcatttttacacataacaaggctgttatttggcagaag
accagggtgtcggatcacaagatggctctgctgtcagtcctgggaactgccgtaatgagc
agcatggtacctttccaacatcagtgtgaagattctgaggtgcttcttagtggatttctt
ccaaaaccagattctaaccatacgttgacaagtctttccagcccaggcagaagttttatc
tttataaaccaacgactggtgtatcagaaggatatattaaagctgattcgactgtactgt
aatttgacattcagtaaggatccaatccaaagttaccccattttcttcatcagtattatt
ataccatcttctgctgtggatgtcaatgtaacacctgataaaactcaagtcatgatgcag
aacaaggaatctgtcttacgtgctgttgaaaatgtgttgatgtcgctgtatggaaacctc
cctggtatacttcccgtggaaaataataatacagatgtgtcctcaccagacatgtatgtt
aataaaacaggactaacagatgtgctggttaatgaagccatcccatctggaaatgatgag
ctgaagactcatacttcattcttttcagtcagtaatgacatgcaaaatgttgagcatgga
aaaaacaaggagatctgcttaaggaatcaagtacattgtaatgataatcctcctggtctg
tttgacaaaaatgaagtttctggcattgagaaaatgaggagtgatatatttcaggctgga
tccatcaataatttttcatcaggtggggacagccaaagcgattataaggtaacttttact
atggatgatgcttctcttatggatatgcagcctcatcgtgaccaagggtctcccctggga
gccaagcagattaatgaggcagaaagacttaaggaaagaacaatccccaaggacatttct
gaaatctgtgcagataactggagcaggggaaatgtgttcaaaaattcagaaggtaagaac
ctggaacctgttaagattctgatgccttcaatcgacagagacatgtgccataatgaaagt
gataagagccagccattaaattcaactcaaaattactgcagcaaaaatcccaaaacttca
aatgtgatcaatgaaaaatttggacagattacagcctataatttaatcagtaaccatgta
atcagaaaacctaaatctgcaaatactctttttatgcaagaatatcgctctagaatctta
gcagacaacccaaaggccagtctggagaacattgctgcagaagctgaaaatttgtggata
aagctgagtgaagaggaaaaaagaaagtatgaggagaaagctgtcaaagatgtgaaacgt
tactcggtgcaggctcagaaagccctgaataaaagtacatatcagcctgtaaaagaggtg
gagaagggacttcaagtgaccacagcaaagggtgtgcctcggaagaacagactgaaagct
gccttgtcaaaccaacaaatcctcgacaaaatgtttcagtcccaaattgaaaaaaaaaag
gagcccatgaaaattgtgcaggtgccctttactttgagtactctaaaaggacagcttgga
agactctcaaaaaagtgttcttcagatggagaagagctttgcttcattagtaaactaggc
tttcctggtgcatggattattgcatctgaaaaaaagataatgctgctgaacccttacaga
gtggaagaagccctgctgtttaaacgacttctggataatcataaaattcctgccgagaca
ctagagaagtcaattgtattaacagacagccttttgggtggatcacattatatggatgtt
ctctatactctgcagaaggattccccaaaattaaatggatcaacatacttttcagatttg
agacttgtgggaaatggatttcagataaaagtggtatcaggaacagcttgtaaagaaaac
caattagaaatagaagggatggctaattgcttgccgttttatggcatatcagatctgaaa
gaaattctaaacgcagttataagcaagaatgctaaagaactatctcaatgtagacctcta
aaagtaataaattatctagagggagaagcagtgcgtctgtctcggcagctgcctttatac
ttgtcaaaggaagatgtacaagacacaatttgcaggatgaatcaacagttaggaaatgaa
aataaaggatgtgttcatggtcgaccatttttttatcatttgacagatattccagaagta
aaataa
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