Geotrypetes seraphini (Gaboon caecilian): 117361403
Help
Entry
117361403 CDS
T09159
Symbol
COL6A3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04518
Integrin signaling
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117361403 (COL6A3)
04518 Integrin signaling
117361403 (COL6A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117361403 (COL6A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117361403 (COL6A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117361403 (COL6A3)
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117361403 (COL6A3)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117361403 (COL6A3)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117361403 (COL6A3)
Hyaluronan
Extracellular matrix or blood plasma proteins
117361403 (COL6A3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
Med25_VWA
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
117361403
NCBI-ProteinID:
XP_033802562
UniProt:
A0A6P8QWN4
LinkDB
All DBs
Position
5:118447810..119713414
Genome browser
AA seq
2810 aa
AA seq
DB search
MRKCQSLPLLVALYLFLSGVPRFHAQSAQESTDLVFLIDGSDNVGYNNFLIIRDFLVNLI
ERLSVGEDHIQVGVVQYSSEPRTEFLLNDYTTKANILDVVKALSFKGGEEANIGTALSFV
LENHFIQRAGSRKEDGVPQSLVLISAGKSSDDIRDETNELKQASIFAFSIGTGKADTAEL
HQVATDDSFVFVAPDFQALDDLQNQLLPYIAGVAKRSILLEPPTIITEVVEVNKRDIVFL
IDGTTAMGNNFASIREFIVRIVQRLEIGPDLIQVAVAQYSNTVKDEFFLNTYSTKKDVIA
NVKKIKPMGGGPLNTGAALDYIRNNFFTGSAGSRIVEGVPQLLVLFTGGQSRDDIITPAN
ELKRSGILAFSVGAKNADPAELQEIAFDSSLVFTPTEFRTNPLQNIFHHVLSPLRTLSGV
VIMETPTEVQVFNQRDIIFLLDGSVNVGNDDFTFVRNFLVSLINNLDVGREKMRIGVVQY
SDTPKTEFRLDAYSDKSDVLTRVEQLTLKGGMALNTGAALRFALENLFTEAGGSRINGNI
PQILVLLVAGGSDDPHLQASNALARAGILTFCIGLGKAKKPELEQIAFNPNMVYVTDDFS
ALHTLQQEIIRPLTTYVSGGVEEISLTDNIKKDIVFLLDGSDDVRSGFPALVSFLLRLVE
NLDVGRDKVRIAVVQYSDDVKVNFYLDTYSDRLGVLNGIRHLSLLGGSSLNTGAALDYVT
QNVFTSEAGSRAAEGIPQFLILLSAGKSRDDVMRPSAALKAGGVVPFAIGTKNADITELQ
TISLTPDFVVAVPDFDHLETVEQQISQKVTELTQDQVATLIQTVSQPSTYAESKRDILFL
IDGSSNVAGLFNPIRDFLYKVIDDLNVGPDTTRVSVAQYSDNIKDEFRFNTYSSKQDILN
HIRKMKLKTGRTLNTGAALAYAKNELLTSNAGSRIDDGIPQFLVLLSGGKSRDRIDEQAD
ALKSSNVLTFAIKAKNADTTELEKIALSPKFILLAEDLTTISNIHPELVNLLKTDKIEVI
EGDKRDVVFLIDGSRNVGPEFSYIRDLITKIIDKLDVSFDNTRVSVVQYSEEPEVEFLLN
THSTKDDIQGAVRKIVPKGGRVVNTGKALDYVSKNIFTRPSGSRIEDGVPQFLILLSSGT
SSDDVDESASQIKQVGVAPFLIGKNVDSEETKKISLSPEYVFSVSSFQELPNIEQKLLTP
ISTLSTQQIQTILATTEDDSGSDGEKKDIVFLIDSSVNVGPTGIPHIRDFIRRVVQNLNV
GQNQIRIGILQYSNEVFPEFVLNYYKTKNDVMDHIRRLRYKGGAPLNTGKALDYVAKNYF
VKSAGSRIEEGVTQQLVLLTGGRSQDDVNSFAQILGDAGIRSLGIGAKNADRTQVESITS
DPRLIFMINDFKDLPSIESRLVRSFEAQNIIPTPPVTPSVDGKKQADIVFLVDGSINLGR
DNFQEVLKFVYGIVDAVYSEGDAIQVGLTQYNSDVTDEFFLKDYNNRESILDVISKVGYK
GGRIVNTGAAIKHLDEKHFVKESGSRIDQGVPQIAFIITGGKSADNVEGAVQSLGSKGIN
LFAVGLKDIPMEEVSKLASNSATSFRVRNVQELSELNEQILTTLEAVMHKKLCPGMPEVS
KECKLDVIVGFDVSDISPGQNMLAVQRGMEFKVEHILKRISQMQKISCTSDKAPVVRVAV
IAQSTTGATEGFDFAEYRDELFDKFKRLATRGPFVLTSKTLQTYANKFTTSSDRNSVKVV
IHLSDGMDEGMAELQAASSALKNSGVNAFLLVGLEKVPKFEDMMKLEFGRGFTYKNPLRL
NLLDLDYEIAEEIDNIAEKSCCGVPCKCSGQRGDRGVLGAIGPQGPPGEKGHRGFPGEEG
GVGERGPPGLNGTQGFQGCPGQRGSKGSRGFPGEKGEQGEMGLDGIDGEDGEKGAAGFLG
MGGNSGARGYRGLKGERGERGDSGLRGDPGEPGSDNTQRGPKGTKGEVGPVGEAGEDGPP
GTAGGPGKKGGFGRRGSPGAKGNPGTSGQVGSSGEQGMRGPQGPPGPLGTPGVRGEQGSA
GPRGTAGALGPPGDHGKVGSYGAKGEPGDPGIKGPDGPLGPRGETGDDGRDGIGGIGPKG
KKGEMGFPGYPGPKGSSGDQSGDGEPGPKGNRGRRGNAGEPGVLGQKGERGYPGSSGLKG
SPGDSREKCALVRNIKDKCPCCSGPKECPVYPTELAFAIDTSLGVNQDAFNRMKQAVLRI
LGQLTIAESNCPRGARTAVVTYNTDVTTEIRFADSKKKTALIQQIENLQIPQSSKARSLE
TVMSFMARHTFKRARNGFLMRKVAVFFSNEPTKASPQLNEAVLKLYDAGIYSIFLINRED
RALSQALQINNTRMAEAIVLGAGADQFKETIRRVLACHVCLDVCDPEDICGPGLTSPGFR
DRRGTPTEADIDIAFIVDSSYTTTNVQFAEIKKYISHVVDQLEISSDPKTSDHHARVAIL
QHAPNEYHKNSSIIPVKVDMSLTEYGSKEAIQNFIFSKMTQLNGVPAMRHAIAYATENVF
ENVPNPRNLKVIVIMMTGEVKGMELELLKKTVTEAKCKGFFIVMLGIGKKVNFKNVYNLA
SEPQDVFFKRIYKPSEMHEEPLLRFGQQLPAFVNSGNAFHLSPEIRKNCDWFQSDQPLKF
PFRLAPKHMKNVEYILSSTEKTADLTDPCLLDFDMGMQCKDYQVKWFFDSKNKICTQVWY
GGCGGNANRFETEAECISKCMELPAERVIQQPLRDEKLLPDSDICRLQKVEGTCTDYVLI
WYYDPKTKSCARFWYGGCGGNDNRFSTQKECEKACIPAQIYPGVITAIGN
NT seq
8433 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaatgccaatctttgccattattggtggccctttatctcttcctctctggtgtt
cccagatttcatgcccaatcagcacaagagtcaactgaccttgttttccttattgatgga
tcagacaacgtcggctataacaatttcctgatcatacgtgacttcctagtaaatctgatt
gagaggttatcagtgggagaggatcacatacaagttggggtagtacagtacagcagtgag
ccaagaactgagtttttgttgaatgattataccaccaaagctaacattctggatgttgtg
aaggctcttagtttcaaaggtggtgaggaagccaatattggcacagccctaagttttgta
ctagaaaatcacttcatacagcgggcaggcagcagaaaagaggatggtgtccctcaatca
ttagtgcttattagtgcagggaagtccagtgatgacattagagatgaaacaaatgagtta
aagcaagctagtatatttgcatttagcattgggactgggaaggctgacacagcagaacta
caccaggttgctaccgatgacagctttgtgtttgttgccccggatttccaagctcttgat
gatcttcagaaccagttactgccgtatattgctggagtggccaaaagatccatactatta
gaacccccaaccattattacagaagttgttgaagtgaacaagagagatatagtcttccta
atagatggcacaactgcgatgggaaataactttgcttcaattcgtgaattcattgtcaga
attgtccagagacttgaaattggaccagaccttatccaagtagcagtggctcagtactca
aacactgtaaaggatgagttctttctcaatacctactcaacaaaaaaagatgtgatagct
aatgtgaaaaaaattaaaccaatgggtggtggaccactcaatactggtgctgcactggac
tatatccggaataatttcttcactggttccgctgggagccggatagtggaaggtgttcca
caactgttggttcttttcactggaggccagtcccgagatgatattattacaccagccaat
gagctcaagcggagtggcatcctagctttctctgttggtgctaaaaatgcagatccagct
gaacttcaagaaattgcatttgattcaagtctggtttttactccaactgagttccgtact
aaccctctacagaatatttttcatcatgtgctgtcccctttaagaactctctctggagta
gtcattatggaaacaccaacagaagttcaagtatttaaccaaagggatatcatcttcctt
ttggatggatcagtcaacgttggaaatgatgacttcacatttgtgcgcaactttcttgtg
agtttaattaacaaccttgatgttggaagagagaaaatgcgaattggtgtagtacaatat
agtgatacacctaaaaccgaattccgtttagatgcgtactcagacaaatcagatgtgtta
acccgtgtggaacaattgacattgaaaggtgggatggctctaaatactggtgctgcacta
aggtttgctcttgaaaacctcttcactgaagctggtggcagcaggataaatggaaatatc
ccacagatcttggtgttactagtagcaggtgggtctgatgatccacatttacaagcatcc
aatgctttagctcgagctgggattttgacattttgtattggacttgggaaagccaaaaag
cctgagctggaacagattgcatttaacccaaacatggtgtatgtgacggatgatttcagt
gccctgcatactttgcaacaggaaataattagacctttaaccacttatgttagtggaggt
gtggaagaaatttcactcacagataacatcaagaaggatattgtgtttctacttgatggc
tctgatgatgtcagaagtggttttcctgcgttggtcagctttcttctaagactagttgaa
aaccttgatgtaggccgtgacaaagtgcgaattgctgtggtccagtatagtgatgatgtc
aaagtcaacttctatttggacacatactcagatcgtctaggggtactcaatggtattcga
catctatctttgttgggcggatcttcactcaacactggtgcagccctagattatgtaact
caaaatgtatttactagtgaagcaggaagcagagcagcagaaggcatcccccaatttttg
atcttgctgtcagctggaaaatcaagggatgatgtgatgagaccttcagctgctttgaaa
gctggtggagttgtaccttttgccattggaaccaagaatgctgatatcacagagcttcaa
actatttctcttaccccagattttgttgttgctgttcctgactttgatcatctagaaaca
gttgagcagcagatctcacagaaagttactgaacttacacaagatcaagtagcaactctc
atccaaactgtttcacaaccttctacttatgcagaaagcaagagagatattttattcttg
attgatggttcatcaaatgtggcagggctcttcaacccaattcgagatttcttatacaag
gtgatcgatgatctgaatgtgggacctgacacaactcgagtttctgttgctcaatatagt
gacaacatcaaagatgaattcagatttaatacctactcttccaagcaagacatacttaac
catattagaaagatgaaattaaagacaggaaggaccctcaacacaggtgcagcattggct
tatgcaaagaatgaactcctgacaagcaatgcggggagcaggattgatgatgggataccc
cagttcttagtattactttctggaggaaaatcaagagacagaattgatgaacaagcagat
gccctgaaaagttccaatgttttaacttttgcaatcaaagctaaaaatgctgacactacg
gagcttgaaaaaatagctctgagtccaaaatttattttgcttgcagaagacctcactact
atctcaaacatacatccagagcttgtcaatttgttgaaaacagacaagattgaagtaatt
gaaggtgacaagagagatgttgtgtttttaattgacggctctaggaatgttggacctgag
ttcagttatatccgagacttaatcacaaaaataattgacaaattggatgtgagttttgat
aacacacgagtatctgtggttcagtacagtgaggagcctgaagtagaatttttgctgaat
actcattctaccaaggatgacatacagggtgcagtaagaaaaatagttcccaaaggtggg
agagtggtgaacacaggaaaagctcttgattatgtgtcaaaaaatatcttcactagacca
tctggaagcagaattgaggatggagttcctcagtttttaatccttctcagttctgggaca
tcttctgatgatgtagatgagtcggcaagccaaataaaacaagttggtgtagcacccttt
ttaattggaaagaatgttgactctgaggaaaccaaaaaaatttctttgagtccagaatat
gtgttttctgtgtcaagcttccaggaacttcctaacatagagcagaagctgttgactcca
atatcaactttgtctacccaacagattcagacaattttggcaacaacagaagatgattct
ggttctgatggtgagaagaaagacattgtcttcctcattgatagttctgttaatgttggg
ccaacaggaatccctcacatccgtgacttcattcgaagggttgttcaaaatctaaatgtg
ggacaaaaccaaataaggattggaatactccagtatagtaatgaggtctttccagagttt
gttttgaattattataaaaccaagaatgatgtgatggaccatatacggcggcttcgctat
aaaggaggggcaccactaaacactggaaaagctctggactatgtggcaaagaactatttt
gttaaatctgctggaagcagaatagaagagggagtcactcaacaattggtgcttctcaca
ggtggcagatcccaggatgatgtaaacagttttgctcaaatcttaggagatgctggaatc
agaagtctgggaataggcgcaaagaatgcagacaggacacaagtggaatcaattacttca
gaccctcgacttatattcatgattaatgatttcaaagaccttccaagtatagaaagcaga
cttgtaagatcatttgaggctcagaatatcataccaacacctccagtaacaccatctgtt
gatggtaaaaaacaagctgatattgttttcttggtggatggctcaataaacttgggaaga
gataactttcaggaagttcttaagtttgtatatggcatagttgatgctgtttattctgaa
ggtgatgccatccaggtaggcctgacccagtacaactctgatgtcactgatgaattcttc
ttaaaagactacaacaacagggagagcattttggatgtgatttccaaagttggatacaaa
ggaggtagaatagtaaacacaggggctgccatcaagcaccttgatgaaaagcactttgta
aaggaatctggtagcagaattgatcagggagtacctcagattgcattcattataactggt
gggaaatctgctgacaatgtggaaggagcagttcaatcattgggaagcaagggcatcaat
ttatttgcagtgggactgaaagatattcccatggaggaagtgtccaagcttgctagcaat
agtgctacatcttttcgagtacgaaatgtccaggaactgtcggagctgaatgaacaaata
ttgaccaccctggaagctgtcatgcataagaaattgtgcccaggaatgccggaagtctcc
aaagagtgcaagctggatgtgattgttggatttgatgtgtcagatatcagccctggacaa
aatatgcttgcagttcagagaggaatggaatttaaagtagaacatattctgaaaagaatt
tcccagatgcagaaaatcagctgtacctctgataaggctccagtggttcgagtagcagtc
atagcacaaagcacaactggagcaacagaaggatttgattttgcagaatatcgtgatgag
ctctttgataagtttaaacggttggccactcgtggaccatttgttcttacttctaaaact
ctgcaaacatatgcaaataagttcactacatcttctgacagaaacagcgtgaaggttgtt
attcatctttccgatggtatggatgagggaatggctgagctgcaggctgcatccagtgct
ctgaagaattcaggtgtgaacgcattcctccttgtgggtttggaaaaggtgccaaagttt
gaggatatgatgaaattggagtttggacggggttttacctataaaaatcctttgcgactt
aacctattggatttagattatgagattgcagaggaaattgataatattgcagaaaaatca
tgctgtggagttccttgtaaatgctctggacaaagaggagacagaggagttctcggtgct
attggaccacaggggccaccaggtgagaagggtcacagaggtttcccaggtgaagaaggt
ggagttggtgagcgagggccaccaggtcttaatggaactcagggatttcaaggatgtcct
ggtcaaagaggaagcaagggttcacgtggttttccaggagaaaagggtgaacagggagaa
atgggtctggatggaatagatggagaagatggagaaaaaggagcagcaggtttccttgga
atgggagggaattctggagcaaggggttatagaggacttaaaggtgaaagaggagaacga
ggagactctggacttcgaggtgacccaggggaacctggaagtgataatacacagcgagga
cccaaaggaactaagggtgaagtaggaccagtgggtgaagctggtgaagatggtccacca
ggcactgcaggaggacctgggaagaaaggtggttttggtcgaagaggatcgccgggagct
aaaggtaatccaggtacctcaggacaggtgggatcatcaggagagcaaggaatgaggggc
ccacagggtccaccaggaccattaggtactccaggtgtaagaggtgaacaaggaagtgct
ggtccaaggggtactgctggtgctttagggcccccaggtgatcatggtaaagttggatcc
tatggagcaaagggagaacctggagatcctggaatcaaaggaccagatggaccactagga
cctcgaggagagacgggggatgatggacgtgatggcattggtggtataggacctaaaggc
aaaaaaggagaaatgggtttcccaggatatccaggaccaaagggttcaagtggtgatcag
tcaggagatggagagccaggtccaaaggggaacagaggtcgaaggggcaatgccggagaa
ccaggagtacttggccagaaaggcgagcgaggctacccaggatcatcaggtctaaaagga
agtccgggagattcaagagagaaatgtgctcttgtaaggaacatcaaagataaatgtcct
tgctgttctggtcctaaggagtgcccagtctatccaacagaattagcatttgcaatagat
acttccttaggagtcaaccaagatgcttttaacagaatgaagcaggcagtcttgagaatc
cttggtcagttaacgattgctgagagcaactgcccaaggggagcccgaacagctgtagtc
acatacaatactgatgttactactgaaattcgctttgctgattctaagaagaaaactgcc
ctaatacagcagattgaaaacctgcagatcccccagagcagcaaggcacgcagcttggag
actgtcatgtccttcatggctaggcatacttttaagcgagcccgcaatggatttctgatg
aggaaggtggcggtctttttcagcaatgaaccaaccaaggcatcaccacagctaaatgaa
gcagtgctgaagctatatgatgccgggatttactccatttttctcattaacagagaggac
agggcactcagtcaggcactacagatcaacaacactagaatggcagaggccattgtcctt
ggtgcaggtgcagatcagtttaaggaaaccatcagaagagtactagcctgccatgtatgt
ctggatgtatgtgatccagaagatatttgtggaccaggtttaacaagtccaggattcaga
gatagaagagggacacctactgaagcagatattgatatagcctttattgtggatagttct
tacacaaccaccaatgtccaatttgctgaaataaaaaaatacatttctcatgtagtagac
caactagagatcagctctgatccaaaaacatcagatcatcatgcaagggttgccatcctc
caacatgctccaaatgaatatcataagaattccagcattataccagtgaaagtggacatg
tcactcactgaatatggatccaaagaagcaatacagaatttcatttttagcaagatgacc
cagctgaatggtgtcccagctatgagacatgcaattgcatatgctacggaaaatgtattt
gaaaatgtgccaaaccccagaaacctaaaggtcattgttataatgatgactggtgaagtt
aaaggaatggaattagagcttttaaaaaaaacagtcactgaagccaaatgcaaaggattc
ttcattgtaatgctaggaatcggcaagaaggtgaatttcaaaaatgtttataacttggcc
agtgagccacaagatgtatttttcaaaagaatttacaaaccctcagagatgcatgaagaa
ccattattgcggtttgggcagcagcttccagcattcgtcaacagtggtaatgcatttcac
ctttccccagaaattagaaaaaattgtgactggttccagagtgatcagccattaaagttc
cccttcaggcttgctccaaaacacatgaagaatgtagagtacatactttcaagcacagag
aaaacagctgatttgacagatccttgtttgttggattttgacatgggcatgcaatgcaag
gactatcaggttaagtggttctttgacagcaaaaacaagatctgcacccaggtgtggtac
ggtgggtgtggtgggaatgccaatagatttgagacagaagctgagtgcatcagcaaatgt
atggagctaccagctgaaagagtcattcaacagcccctccgggatgaaaaattactacca
gatagtgatatctgcagacttcaaaaagtggaaggaacttgcacagactatgtactgata
tggtactatgatccaaagaccaaaagctgtgccagattctggtatggaggttgtggtgga
aatgataacagatttagcacacagaaagaatgtgaaaaagcttgtataccagcacagatt
tatccaggagttattacagcaataggaaactaa
DBGET
integrated database retrieval system
