Geotrypetes seraphini (Gaboon caecilian): 117361628
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Entry
117361628 CDS
T09159
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117361628 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117361628 (SF3B1)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117361628 (SF3B1)
Spliceosome [BR:
gsh03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117361628 (SF3B1)
Complex B
117361628 (SF3B1)
Complex C
U2 SnRNP specific factors
117361628 (SF3B1)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117361628 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
117361628
NCBI-ProteinID:
XP_033803118
UniProt:
A0A6P8RGA7
LinkDB
All DBs
Position
5:174383575..174620072
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
NEQEDDDDDDSSTTLLGQKKPGYHAPVALLNDIPQTTEQYDPFAEHRPQKIADREDEYNK
NKRRTMIISPERHDPFAYGGKTPDPKTNARSYVDVMREQHITKEEREVRQQLAEKDKAGE
LKVVNGTASQPPSKRKRRWDQTADQTPGSTPKKISSWDQAEVTPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGVDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGLTGFHMQTEDRTMKSMNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatagccaagacccacgaagatattgaagcacaaattcgggaaattcaagga
aagaaggctgctttggatgaagctcagggagtgggccttgattctacaggttattatgac
caagagatttatggtggcagtgacagcagatttgctggctatgtgacatctattgctgca
aatgaacaggaagatgatgatgatgatgattcatctacaaccttgcttgggcagaagaag
ccaggttaccatgctccagtggcactgcttaatgacattccacaaacaacagaacaatat
gatccatttgctgaacatcgtccacagaagattgcagatcgggaagatgaatataataaa
aataagaggcgaaccatgatcatttccccagagcgacatgatccttttgcttatggaggc
aagacaccggatcctaaaacaaatgccaggtcatacgtggatgtcatgcgtgaacagcac
ataacaaaagaagagagggaagttaggcagcagctggcagagaaagataaagccggagag
cttaaagttgtcaatggaacagcatcccaaccaccatcaaaacgcaagcgccgttgggat
cagacagctgaccaaacacctggctccaccccaaagaaaatatccagctgggatcaagcc
gaggtcactcctggacatacaccttccctcaggtgggatgaaactcctggacgtgcaaaa
ggaagtgaaactcctggtgcaacaccaggctcaaagatttgggatccaactcctagtcat
accccagcaggtgctgctactcctggtcgtggtgatacacctggtcatgcaacaccaggg
catggaggtgcaacctcaagtgcacgtaaaaataggtgggatgagacccccaagacagaa
agagatactccgggacatggcagtggatgggctgagacacctcgcacagatcgtggtgtt
gattccattggtgagacaccaactcctggagcaagcaaacgcaaatcacgctgggatgaa
acaccagctagccagatgggaggcagcactccagttttgacacctggcaaaactccaatt
ggtacaccagccatgaacatggccactcctactccaggtcacataatgagcatgacccct
gaacagctccaggcttggcgatgggagagagaaattgatgaacggaaccgtcccctctct
gatgaagagttggatgccatgtttccagaaggatataaggttctcccccctccagctggt
tatgttcccattcgtactccagctcgtaagctgacagcaactccaacaccactgggtggt
ttgactggattccatatgcaaactgaagataggacaatgaagagtatgaatgatcaaccc
tcaggaaatctgcccttcctcaaaccagatgatattcagtactttgataaactattggtt
gatgttgacgaatcaacacttagccctgaagagcagaaagagagaaaaatcatgaaatta
ctcttgaaaataaagaatgggacccctccaatgagaaaggctgctcttcgtcagataact
gataaagcacgtgagtttggagctggcccgttgttcaatcagattttgcctctgctgatg
tcaccaacccttgaagatcaagagcgacacttgcttgtcaaagtcattgacagaatcttg
tacaaattggatgacttggtccgaccatacgtgcataagattcttgtggttattgaacca
ttgcttattgatgaagattattatgctagagtggaaggcagagaaatcatttccaacttg
gctaaagcagctggcttggctacaatgatttccaccatgcgacctgatattgataacatg
gatgaatatgtccgtaacacaactgctcgagcctttgctgttgttgcttctgctttgggc
attccttcccttttacctttcttgaaagctgtatgtaaaagcaaaaagtcttggcaggct
agacatactggcatcaagattgtacagcaaatagctattcttatgggctgcgctatcttg
ccgcatcttagaagtttagtggaaattattgaacatggtctagtagatgaacagcagaaa
gtccgcactattagtgctttggctattgctgctttggctgaagcagctacaccttatggg
attgaatcctttgattctgttttaaaacccctttggaagggtatccgtcaacacagaggc
aagggtctggctgcctttttgaaagctattggttatcttattccacttatggatgctgag
tatgcaaactactatactcgagaagtgatgttgattcttatcagagaattccagtctcct
gatgaagaaatgaaaaagattgtgctaaaggtggttaagcagtgttgtggcacagatggt
gtggaagcaaactacataaaaacagaaattcttccacctttcttcaaacacttttggcag
cacaggatggcattagatagaaggaactacagacagttggtcgataccactgttgagctt
gcaaacaaagtgggtgcagcagaaattatttccaggattgtggatgatttgaaagatgag
gctgaacagtacagaaaaatggtgatggaaacaattgagaagataatgggtaacttagga
gcagctgacatagaccacaagctggaagagcagcttattgatggcattctgtatgctttt
caggaacagactacagaggattctgtgatgttgaatggctttggtacagtagtgaatgct
ctggggaaacgagtgaagccatacctgcctcagatctgtggtacagtcttatggcgttta
aacaacaaatctgccaaagtgagacaacaagctgcagacctgatctctcgtactgccgtg
gtcatgaagacgtgtcaagaggaaaaactcatggggcatttaggagttgtcctgtatgag
tacttgggcgaagagtacccagaggtattgggcagcattttaggagcacttaaagcgatt
gtgaatgttataggaatgcacaagatgacaccaccaattaaagatctgttgccaagactc
acgcctatcttgaagaacaggcatgaaaaagtacaagaaaactgcatcgaccttgttgga
cgtattgcagataggggagcagaatatgtatctgctagagaatggatgaggatttgcttt
gaactcttggaactgttgaaagctcacaagaaagccatcagaagagccactgtaaatact
tttggctatattgcaaaggctattggacctcatgatgtcttggccacattgctgaacaat
ttgaaagtacaggaaagacagaacagagtgtgtactacagtagctattgccattgtagca
gaaacatgttcacccttcacagtgctgcctgccctcatgaatgaatatagagttcctgaa
ctaaatgtccagaatggtgtattaaaatcactgtccttcttgtttgaatatattggagag
atgggcaaggattatatctatgctgtaactcctttgttagaagatgctttaatggacagg
gaccttgtccacagacagacagccagtgcagttgtacagcacatgtccctcggagtttat
gggtttggttgtgaagattctcttaatcacttgttaaattacgtctggcccaatgtattt
gagacttctcctcatgttattcaggctgtgatgggagcactggagggcttaagagttgct
attggaccatgcagaatgttgcagtattgtttacagggtttgttccaccctgccaggaaa
gtgcgagatgtgtactggaagatctacaactctatttatattggttcacaagatgccctg
attgctcactatccaaggatctacaatgatgataagaacacttacattcgatatgaactt
gactacatcttataa
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integrated database retrieval system
