Geotrypetes seraphini (Gaboon caecilian): 117361658
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Entry
117361658 CDS
T09159
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117361658 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117361658 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117361658 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117361658 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117361658 (COL4A5)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117361658 (COL4A5)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117361658 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117361658
NCBI-ProteinID:
XP_033803179
UniProt:
A0A6P8R084
LinkDB
All DBs
Position
5:complement(20061706..20356194)
Genome browser
AA seq
1695 aa
AA seq
DB search
MKRFALCRSLPGFAFCCLGFHLLIWAPGARAAICHGCSPGSKCDCSGVKGAKGERGWPGL
EGQPGQPGFPGPEGPPGPRGGKGDDGLPGPAGPKGIRGPPGLPGFPGTPGLPGLPGQDGA
PGPPGIPGCNGTKGEHGFPGSSGFPGLMGHPGPPGLPGLKGEPGEFIGGIQPGQKGEPGT
PGLPGLPGTVGSIGIPGPSGPFGPPGFTGPPGPPGLPGPKGNMGLTFQAKKGDKGEPGLQ
GPPGPPGQIREQQKPGDFEVQKGDKGDPGEHGPMGPAGPRGFPGPPGGTKGEKGEPGEQG
KRGKPGKDGESGLPGEGGFQGESGIPGSPGRPGEKGMKGDRGFPGSPGPVITRPGPGGGG
PKGNMGLPGLPGQKGERGLTGSQGPPGVPGPPGISSTGQPGSPGFPGERGQKGDLGFPGL
AIPGPPGVIGQRGTPGPQGPPGPPGPPAPSVGEICQPGSPGLPGLQGEQGFIGEQGQKGE
KGDVCLNCIGTGFQGPPGEPGLPGAPGNPGSPGAPGLKGDLGLPGLTGPPGPSGYAGNPG
TSGRPGNKGEPGEVFGVPGLKGDKGDPGFPGSPGLPGLEGIPGRDGGPGFPGSKGEPGGL
ALKGERGLPGDPGVSGLPGDRGPVGPPGFGLQGPPGEKGIQGVSGRPGAPGAPGPTGEPG
RTVSEPGPPGLPGAPGEAGSPGEPGHSGQPGRSGLPGAKGDPGVPGIGFPGSSGPKGLPG
TSGAPGVPGLQGKPGQDGIPGLPGLTGQKGEPGFGLPGPAGPPGPTGLKGSHGPKGDPGI
PGSPGIPGRSSLEGLPGPKGDPGLNGQPGLPGPQGVAGIGGIGPPGPSGPPGSAGPPGLP
GLQGVPGAKGDPGPPGYGTPGLPGDRGSPGFPGERGFSGPPGPSGQPGREGSPGLPGAKG
EMGVMGHPGPSGFPGVPGTSGFPGLKGTDGFPGQPGLPGASGLKGAKGELGIQGIPGSFD
PGMLGSKGEKGEPGEPGDPGLNGQKGSPGLPGIQGSQGQNGLPGSSGLPGPKGDSGFPGQ
PGLRGPSGQKGSMGEMGFPGSPGSKGSSGISGRPGQPGSPGHPGFKGEKGEPGLQSYGEQ
GPPGPKGDPGQSGFPGIPGIKGTPGSPGVPGLPGGPGQKGDSGIPGFPGTSGMPGLKGLD
GFPGTPGSPGAPGVKGETGRPGLPGVSGAKGQQGRDGIPGPAGQKGEQGLPGFGSPGSSG
FPGVPGVKGDAGLPGSPGSPGLPGSKGEPGFQGFPGLQGQPGPSGPPGPRTEGPKGSPGP
TGPPGRPGPSGPQGLPGPEGPRGLPGIGGLKGEKGNSGLPGQSGFPGLKGDRGDPGLSGE
SGRPGLNGMKGDPGFPGVPGLSGAKGPSGSPGLPGLRGDTGTPGPPGFTGPPGPKGAVIE
VKGNPGSPGSPGRPGLNGSPGLQGPLGLQGPVGLPGDHGRDGLPGFQGSLGHKGERGLPG
QPGLRGNQGSPGPDGLQGPPGLPGAGSVAHGFLITRHSQTTEIPACPQGTARIYDGYSLL
YVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSME
PLAGRSIQPFISRCSVCEAPAMVIAVHSQTIQIPVCPQGWYSLWIGYSFMMHTSAGAEGS
GQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEIPEMFSKPQSETLKAGD
LRTRVSRCQVCMKRT
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggtttgctctctgcaggagcctgcccggctttgccttctgctgcctgggtttc
catctgctgatctgggcaccgggcgcccgggctgctatttgccatggttgttcaccggga
tcaaaatgtgactgcagtggagtaaaaggggcaaagggtgagaggggatggccaggttta
gaaggtcagccaggccagcctggattcccaggacccgaaggacctcctggaccaagagga
ggaaagggcgatgatggacttccaggaccagctggacccaaaggaatcaggggtccacct
ggacttcctgggttcccaggcaccccgggccttcctggattacctggccaggatggggcc
ccaggacctccaggcatcccaggatgcaatggcacaaagggagaacatggttttcctgga
agttcaggtttcccaggattaatgggacatcctgggcctccaggactgcctggtctgaag
ggggagccaggtgaattcattggggggatccagccaggacagaaaggagaacctggaacc
cctggcctgccaggtctacctggtactgtgggttccattggcattccaggtccatctggt
ccttttggaccaccagggttcacgggacctccaggtcctccaggtcttccaggaccaaag
ggcaacatgggtttgactttccaagcaaagaaaggagataaaggcgagccgggtctccag
gggccgccggggccaccaggacaaattcgggagcagcagaaaccaggcgattttgaggtt
cagaaaggagataagggtgatcctggtgaacatggcccgatggggcctgcaggacccaga
ggtttccctggtccaccaggcggtacgaaaggggaaaagggagaaccgggagaacaaggc
aagagagggaaacctggcaaagatggagagtccggcctaccaggcgaggggggctttcaa
ggtgaatctggtataccaggatctccggggagacctggggaaaagggtatgaaaggtgac
cgtggctttcctggctctcctggaccggtcatcacaagaccagggccaggtggaggagga
ccaaaaggcaacatgggattgccgggacttccgggacagaaaggagagcgtggattgact
ggttcacagggtcctccgggagttccaggacctccgggtatttccagcactggccaacct
ggatcacctggttttccaggagagagaggacagaagggtgatcttggttttccgggactt
gccataccaggccctcccggagtaattggacagcgtggcacacctggacctcaggggcct
cctggacctcccgggcctcctgctccttctgttggggaaatatgccagcctggatcaccc
ggccttccaggactccaaggagagcaaggctttattggggagcaaggacaaaaaggagag
aagggagacgtctgcttgaattgtataggaactggttttcaaggccctcctggtgaacct
gggctaccaggagctcctggaaatccaggatctcctggtgcccctggacttaaaggtgat
ctaggacttcctggcttgactggtccacctggaccctcaggctatgcaggaaatccaggg
acctctggccgtccaggtaataaaggcgagccaggagaagtttttggtgttccaggactg
aagggtgacaagggtgaccctggttttccaggttctccaggtcttcctggcctggaagga
attcctgggcgagatggaggtccgggctttccaggctccaagggtgaacctggcggcttg
gccttgaaaggagagagaggtctcccaggtgaccctggagtttctggacttcctggtgac
agggggccagtgggccctcctggatttggtctgcagggtcctccaggtgaaaaaggcatt
cagggagtttcaggtcggccaggcgcaccgggagctccaggtcctacaggagaaccagga
cgaactgtgtccgagccaggcccccctggtctcccaggcgcacccggtgaggctggctct
ccgggtgaacccggtcattcaggtcagcctggccggtcaggtcttccaggtgcaaaaggt
gatccaggagtgcctggcattggatttcctggctcatcaggtccaaaaggtttgccagga
acctcgggagcacctggtgttccagggttgcaaggaaaacctggtcaagacgggataccg
gggttaccaggtttgacaggccaaaagggtgagcctggatttggcctcccgggtcctgca
gggccaccaggtcctacaggtttaaaaggaagtcacgggccaaaaggtgaccccggtatt
ccaggaagccctggtattccaggacgttcaagtctcgaagggttgccaggaccaaaaggt
gatcctggattaaatgggcaacctggtttgccaggacctcagggagtcgcaggaattggt
ggcattggccctccaggaccaagtggtccacctggatctgcagggccaccaggtctacca
ggattacaaggggttccaggagcaaaaggtgaccctggtcctcctggatatggtacaccg
ggtctcccaggtgatagaggaagcccaggattccctggagaacgtggattttcaggcccc
cctggcccttcagggcagccaggaagagaaggatcccctggactcccaggtgccaaaggt
gaaatgggtgtgatggggcatccagggccctcaggctttcctggagttcctggcacttct
ggctttcctggtctaaaaggtaccgatggctttccaggtcaacctggcctgcctggtgct
agtggtctgaaaggcgctaaaggtgaacttggcatacagggtattccgggatcttttgat
ccagggatgctgggatcgaaaggagaaaaaggagaacccggtgaaccaggtgaccctgga
ctgaatggccagaaaggcagtccaggtcttcccggaatccaaggttcacaaggtcaaaat
ggactccctggttcatcaggacttccaggccccaaaggagattcgggcttccctggacag
ccaggtctacgaggtccttcaggacagaaggggagcatgggagagatggggttccctggt
tctcccggaagtaaagggtcgtcaggtatatcgggacgacctggacagccaggatctcct
ggacatcctggatttaaaggagaaaagggagaaccgggccttcaaagctatggtgaacaa
ggtccaccggggcctaagggtgatccaggccaaagtggattcccaggaattccagggatt
aaaggaacacccggcagcccaggtgtgcctggtttaccaggtggcccaggtcaaaaggga
gactctggcattcctggattcccaggaacatcgggtatgccagggctgaaaggattagat
ggatttccaggtactcccgggtcccctggtgctcctggtgtcaaaggtgaaacgggtcgt
cctggacttccaggtgtctctggcgcaaaaggacagcaagggcgtgatggaatccccgga
ccagctggacagaagggtgaacaaggtctgccgggtttcggttctccaggttcctcaggt
tttcctggcgttccaggagtaaagggtgatgcaggattgcctggctctccaggaagccca
ggacttccaggctccaagggtgaaccaggtttccaagggttccctggtcttcaaggtcag
ccaggtccctctggtcctccaggtccacgtacggagggtcctaaaggtagtcctgggcct
acaggcccaccagggagaccaggtccctcaggtcctcaaggtcttccaggaccagaagga
ccccgtggacttcctggcatcggaggactgaaaggggaaaaaggaaattcgggtctgccc
ggacagtcgggattccctggattaaaaggagatcgaggagaccctggactgtcgggtgaa
tctggtcgccccggcctgaatggaatgaaaggtgatccgggttttcctggagttccagga
ctctcaggtgcaaaaggacccagtgggtctcctggtttgcccggtttgcgtggtgataca
ggtaccccaggaccaccaggcttcaccggcccacctggtcccaaaggtgcagtcattgaa
gtaaaaggaaatcctggctccccaggttcgccaggccgccctgggctgaacggttcgcct
gggctacaaggtcctctagggttacaaggccccgtcggactacctggagatcatggtcgc
gatggacttcctggatttcagggttcgctcgggcataaaggagaaagaggtttaccgggt
caaccaggtttaagaggaaaccaaggctcgcctggtccagatggtttacaaggtcctcca
ggtcttccaggagcagggtccgtggctcatggattcctcattacgcggcacagccagaca
acagagataccagcgtgcccacaaggaacagcaagaatctatgatggatattctcttctg
tatgtgcagggaaacgagagagcgcacggccaggatttggggactgctggcagctgtctc
cgtcgcttcagcaccatgcccttcatgttctgcaacatcaacaacgtctgcaattttgcc
tctcgaaacgattactcctactggctttcaaccccagagcccatgcccatgagtatggag
ccattagctgggaggagcatccagccattcattagccggtgttcagtatgcgaagctcca
gccatggtgattgcagttcacagccagaccatccaaatcccagtatgcccacaaggctgg
tactccctttggattggctattcgttcatgatgcacactagcgctggcgcagagggatcg
ggacaggctctagcatctccaggctcctgtttggaagaatttcgatctgctccgtttatt
gaatgtcatggccgcgggacttgtaattactatgccaactcgtacagtttctggctggca
actgtggaaataccggaaatgtttagcaaacctcagtcagaaacgttgaaagctggcgac
ttaagaacacgagtcagtcggtgtcaagtttgtatgaaacggacgtaa
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integrated database retrieval system
