Geotrypetes seraphini (Gaboon caecilian): 117361658
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Entry
117361658 CDS
T09159
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04382
Cornified envelope formation
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04518
Integrin signaling
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117361658 (COL4A5)
04518 Integrin signaling
117361658 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117361658 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117361658 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117361658 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117361658 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117361658 (COL4A5)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117361658 (COL4A5)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117361658 (COL4A5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117361658
NCBI-ProteinID:
XP_033803179
UniProt:
A0A6P8R084
LinkDB
All DBs
Position
5:complement(20061706..20356194)
Genome browser
AA seq
1695 aa
AA seq
DB search
MKRFALCRSLPGFAFCCLGFHLLIWAPGARAAICHGCSPGSKCDCSGVKGAKGERGWPGL
EGQPGQPGFPGPEGPPGPRGGKGDDGLPGPAGPKGIRGPPGLPGFPGTPGLPGLPGQDGA
PGPPGIPGCNGTKGEHGFPGSSGFPGLMGHPGPPGLPGLKGEPGEFIGGIQPGQKGEPGT
PGLPGLPGTVGSIGIPGPSGPFGPPGFTGPPGPPGLPGPKGNMGLTFQAKKGDKGEPGLQ
GPPGPPGQIREQQKPGDFEVQKGDKGDPGEHGPMGPAGPRGFPGPPGGTKGEKGEPGEQG
KRGKPGKDGESGLPGEGGFQGESGIPGSPGRPGEKGMKGDRGFPGSPGPVITRPGPGGGG
PKGNMGLPGLPGQKGERGLTGSQGPPGVPGPPGISSTGQPGSPGFPGERGQKGDLGFPGL
AIPGPPGVIGQRGTPGPQGPPGPPGPPAPSVGEICQPGSPGLPGLQGEQGFIGEQGQKGE
KGDVCLNCIGTGFQGPPGEPGLPGAPGNPGSPGAPGLKGDLGLPGLTGPPGPSGYAGNPG
TSGRPGNKGEPGEVFGVPGLKGDKGDPGFPGSPGLPGLEGIPGRDGGPGFPGSKGEPGGL
ALKGERGLPGDPGVSGLPGDRGPVGPPGFGLQGPPGEKGIQGVSGRPGAPGAPGPTGEPG
RTVSEPGPPGLPGAPGEAGSPGEPGHSGQPGRSGLPGAKGDPGVPGIGFPGSSGPKGLPG
TSGAPGVPGLQGKPGQDGIPGLPGLTGQKGEPGFGLPGPAGPPGPTGLKGSHGPKGDPGI
PGSPGIPGRSSLEGLPGPKGDPGLNGQPGLPGPQGVAGIGGIGPPGPSGPPGSAGPPGLP
GLQGVPGAKGDPGPPGYGTPGLPGDRGSPGFPGERGFSGPPGPSGQPGREGSPGLPGAKG
EMGVMGHPGPSGFPGVPGTSGFPGLKGTDGFPGQPGLPGASGLKGAKGELGIQGIPGSFD
PGMLGSKGEKGEPGEPGDPGLNGQKGSPGLPGIQGSQGQNGLPGSSGLPGPKGDSGFPGQ
PGLRGPSGQKGSMGEMGFPGSPGSKGSSGISGRPGQPGSPGHPGFKGEKGEPGLQSYGEQ
GPPGPKGDPGQSGFPGIPGIKGTPGSPGVPGLPGGPGQKGDSGIPGFPGTSGMPGLKGLD
GFPGTPGSPGAPGVKGETGRPGLPGVSGAKGQQGRDGIPGPAGQKGEQGLPGFGSPGSSG
FPGVPGVKGDAGLPGSPGSPGLPGSKGEPGFQGFPGLQGQPGPSGPPGPRTEGPKGSPGP
TGPPGRPGPSGPQGLPGPEGPRGLPGIGGLKGEKGNSGLPGQSGFPGLKGDRGDPGLSGE
SGRPGLNGMKGDPGFPGVPGLSGAKGPSGSPGLPGLRGDTGTPGPPGFTGPPGPKGAVIE
VKGNPGSPGSPGRPGLNGSPGLQGPLGLQGPVGLPGDHGRDGLPGFQGSLGHKGERGLPG
QPGLRGNQGSPGPDGLQGPPGLPGAGSVAHGFLITRHSQTTEIPACPQGTARIYDGYSLL
YVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSME
PLAGRSIQPFISRCSVCEAPAMVIAVHSQTIQIPVCPQGWYSLWIGYSFMMHTSAGAEGS
GQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEIPEMFSKPQSETLKAGD
LRTRVSRCQVCMKRT
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggtttgctctctgcaggagcctgcccggctttgccttctgctgcctgggtttc
catctgctgatctgggcaccgggcgcccgggctgctatttgccatggttgttcaccggga
tcaaaatgtgactgcagtggagtaaaaggggcaaagggtgagaggggatggccaggttta
gaaggtcagccaggccagcctggattcccaggacccgaaggacctcctggaccaagagga
ggaaagggcgatgatggacttccaggaccagctggacccaaaggaatcaggggtccacct
ggacttcctgggttcccaggcaccccgggccttcctggattacctggccaggatggggcc
ccaggacctccaggcatcccaggatgcaatggcacaaagggagaacatggttttcctgga
agttcaggtttcccaggattaatgggacatcctgggcctccaggactgcctggtctgaag
ggggagccaggtgaattcattggggggatccagccaggacagaaaggagaacctggaacc
cctggcctgccaggtctacctggtactgtgggttccattggcattccaggtccatctggt
ccttttggaccaccagggttcacgggacctccaggtcctccaggtcttccaggaccaaag
ggcaacatgggtttgactttccaagcaaagaaaggagataaaggcgagccgggtctccag
gggccgccggggccaccaggacaaattcgggagcagcagaaaccaggcgattttgaggtt
cagaaaggagataagggtgatcctggtgaacatggcccgatggggcctgcaggacccaga
ggtttccctggtccaccaggcggtacgaaaggggaaaagggagaaccgggagaacaaggc
aagagagggaaacctggcaaagatggagagtccggcctaccaggcgaggggggctttcaa
ggtgaatctggtataccaggatctccggggagacctggggaaaagggtatgaaaggtgac
cgtggctttcctggctctcctggaccggtcatcacaagaccagggccaggtggaggagga
ccaaaaggcaacatgggattgccgggacttccgggacagaaaggagagcgtggattgact
ggttcacagggtcctccgggagttccaggacctccgggtatttccagcactggccaacct
ggatcacctggttttccaggagagagaggacagaagggtgatcttggttttccgggactt
gccataccaggccctcccggagtaattggacagcgtggcacacctggacctcaggggcct
cctggacctcccgggcctcctgctccttctgttggggaaatatgccagcctggatcaccc
ggccttccaggactccaaggagagcaaggctttattggggagcaaggacaaaaaggagag
aagggagacgtctgcttgaattgtataggaactggttttcaaggccctcctggtgaacct
gggctaccaggagctcctggaaatccaggatctcctggtgcccctggacttaaaggtgat
ctaggacttcctggcttgactggtccacctggaccctcaggctatgcaggaaatccaggg
acctctggccgtccaggtaataaaggcgagccaggagaagtttttggtgttccaggactg
aagggtgacaagggtgaccctggttttccaggttctccaggtcttcctggcctggaagga
attcctgggcgagatggaggtccgggctttccaggctccaagggtgaacctggcggcttg
gccttgaaaggagagagaggtctcccaggtgaccctggagtttctggacttcctggtgac
agggggccagtgggccctcctggatttggtctgcagggtcctccaggtgaaaaaggcatt
cagggagtttcaggtcggccaggcgcaccgggagctccaggtcctacaggagaaccagga
cgaactgtgtccgagccaggcccccctggtctcccaggcgcacccggtgaggctggctct
ccgggtgaacccggtcattcaggtcagcctggccggtcaggtcttccaggtgcaaaaggt
gatccaggagtgcctggcattggatttcctggctcatcaggtccaaaaggtttgccagga
acctcgggagcacctggtgttccagggttgcaaggaaaacctggtcaagacgggataccg
gggttaccaggtttgacaggccaaaagggtgagcctggatttggcctcccgggtcctgca
gggccaccaggtcctacaggtttaaaaggaagtcacgggccaaaaggtgaccccggtatt
ccaggaagccctggtattccaggacgttcaagtctcgaagggttgccaggaccaaaaggt
gatcctggattaaatgggcaacctggtttgccaggacctcagggagtcgcaggaattggt
ggcattggccctccaggaccaagtggtccacctggatctgcagggccaccaggtctacca
ggattacaaggggttccaggagcaaaaggtgaccctggtcctcctggatatggtacaccg
ggtctcccaggtgatagaggaagcccaggattccctggagaacgtggattttcaggcccc
cctggcccttcagggcagccaggaagagaaggatcccctggactcccaggtgccaaaggt
gaaatgggtgtgatggggcatccagggccctcaggctttcctggagttcctggcacttct
ggctttcctggtctaaaaggtaccgatggctttccaggtcaacctggcctgcctggtgct
agtggtctgaaaggcgctaaaggtgaacttggcatacagggtattccgggatcttttgat
ccagggatgctgggatcgaaaggagaaaaaggagaacccggtgaaccaggtgaccctgga
ctgaatggccagaaaggcagtccaggtcttcccggaatccaaggttcacaaggtcaaaat
ggactccctggttcatcaggacttccaggccccaaaggagattcgggcttccctggacag
ccaggtctacgaggtccttcaggacagaaggggagcatgggagagatggggttccctggt
tctcccggaagtaaagggtcgtcaggtatatcgggacgacctggacagccaggatctcct
ggacatcctggatttaaaggagaaaagggagaaccgggccttcaaagctatggtgaacaa
ggtccaccggggcctaagggtgatccaggccaaagtggattcccaggaattccagggatt
aaaggaacacccggcagcccaggtgtgcctggtttaccaggtggcccaggtcaaaaggga
gactctggcattcctggattcccaggaacatcgggtatgccagggctgaaaggattagat
ggatttccaggtactcccgggtcccctggtgctcctggtgtcaaaggtgaaacgggtcgt
cctggacttccaggtgtctctggcgcaaaaggacagcaagggcgtgatggaatccccgga
ccagctggacagaagggtgaacaaggtctgccgggtttcggttctccaggttcctcaggt
tttcctggcgttccaggagtaaagggtgatgcaggattgcctggctctccaggaagccca
ggacttccaggctccaagggtgaaccaggtttccaagggttccctggtcttcaaggtcag
ccaggtccctctggtcctccaggtccacgtacggagggtcctaaaggtagtcctgggcct
acaggcccaccagggagaccaggtccctcaggtcctcaaggtcttccaggaccagaagga
ccccgtggacttcctggcatcggaggactgaaaggggaaaaaggaaattcgggtctgccc
ggacagtcgggattccctggattaaaaggagatcgaggagaccctggactgtcgggtgaa
tctggtcgccccggcctgaatggaatgaaaggtgatccgggttttcctggagttccagga
ctctcaggtgcaaaaggacccagtgggtctcctggtttgcccggtttgcgtggtgataca
ggtaccccaggaccaccaggcttcaccggcccacctggtcccaaaggtgcagtcattgaa
gtaaaaggaaatcctggctccccaggttcgccaggccgccctgggctgaacggttcgcct
gggctacaaggtcctctagggttacaaggccccgtcggactacctggagatcatggtcgc
gatggacttcctggatttcagggttcgctcgggcataaaggagaaagaggtttaccgggt
caaccaggtttaagaggaaaccaaggctcgcctggtccagatggtttacaaggtcctcca
ggtcttccaggagcagggtccgtggctcatggattcctcattacgcggcacagccagaca
acagagataccagcgtgcccacaaggaacagcaagaatctatgatggatattctcttctg
tatgtgcagggaaacgagagagcgcacggccaggatttggggactgctggcagctgtctc
cgtcgcttcagcaccatgcccttcatgttctgcaacatcaacaacgtctgcaattttgcc
tctcgaaacgattactcctactggctttcaaccccagagcccatgcccatgagtatggag
ccattagctgggaggagcatccagccattcattagccggtgttcagtatgcgaagctcca
gccatggtgattgcagttcacagccagaccatccaaatcccagtatgcccacaaggctgg
tactccctttggattggctattcgttcatgatgcacactagcgctggcgcagagggatcg
ggacaggctctagcatctccaggctcctgtttggaagaatttcgatctgctccgtttatt
gaatgtcatggccgcgggacttgtaattactatgccaactcgtacagtttctggctggca
actgtggaaataccggaaatgtttagcaaacctcagtcagaaacgttgaaagctggcgac
ttaagaacacgagtcagtcggtgtcaagtttgtatgaaacggacgtaa
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