Geotrypetes seraphini (Gaboon caecilian): 117361713
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Entry
117361713 CDS
T09159
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03030
DNA replication
gsh03410
Base excision repair
gsh03420
Nucleotide excision repair
gsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117361713 (RFC1)
03410 Base excision repair
117361713 (RFC1)
03420 Nucleotide excision repair
117361713 (RFC1)
03430 Mismatch repair
117361713 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsh03032
]
117361713 (RFC1)
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117361713 (RFC1)
DNA replication proteins [BR:
gsh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117361713 (RFC1)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117361713 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
BRCT_2
AAA_22
PTCB-BRCT
AAA_14
Rad17
AAA_5
RuvB_N
AAA_18
AAA_17
AAA_30
TIP49
AAA_33
nSTAND3
AAA_19
AAA_7
AAA_16
RNA_helicase
NTPase_1
Motif
Other DBs
NCBI-GeneID:
117361713
NCBI-ProteinID:
XP_033803249
UniProt:
A0A6P8R0E5
LinkDB
All DBs
Position
1:225423424..225786616
Genome browser
AA seq
1133 aa
AA seq
DB search
METSEGCLGRWGEGVALCPPSKDIRKFFVMPAEKKPGSGTVEKKEKSQSNEGLTDKKKTA
KDIKLKSSTRDDDPKQKHTIRKKRIIYDSDSEEEEMQIVKKSKKPPEESLLSLKPVKITK
QDPITYVSETDDEDDFIKKKSSRKPKENGASMVNSTKTSGGRSEAETKPHTKAKPPSPVK
LTPTSALDYFGTGSVHRSEKKLVASKRKTMSGSFDAAAAALNDEAIAKQLQLEEDAELER
QLHEDEEFARTLAMLDEVPKNKKARKDEEKKSVSTFNTSPQKTGEHRPSQTGESLNLPLA
LADEALPLQTSSKLALMKGKEDSQRKERVSSNPVSKEKEISSKTEKITPKKEKISPKKSE
STSPEDSEKKRVNFQAYRNFLNREGPKALGSKEIPQGAENCLEGMTFVITGVLESVERDE
AKSLIERYGGKVTGSVSKKTKYLIMGRESGQAKKEKAESLGTTILDEDGLFNLIRTTPGK
KSKYEILAEAESLKATGKMTKTPEKAVQAVKKVTPTKKEAESKKTLLGALKRETTNFEND
LELTKHPEEKQHVLDTESFTPSSNHGKTECLLWVDKYKPTSIKGIIGQQGDQSCVNKLIR
WLKNWHSNNVSDDKKAAGKFNKHGGKDDGFGLKAALLSGPPGVGKTTTAVLVCEELGYSY
VELNASDTRSKNSMKEIVAESLSNTSIKDFYSGASQSVSMKHVLIMDEVDGMAGNEDRGG
IQELIGLIKHSKIPIICMCNDRNHQKIRSLANYCYDLRFYRPRVEQIKGAMMSIAYKEGL
KIPPPAMNEIILAANQDIRQVLHNLSMWCARNKSLNYDQAKDDANRAKKDIKLGPFDVVR
KVFTSGEETSHMTLIDKSDLFFHDYSLAPLFVQENYLYVTPTAAGGDMKKHLLLLSRTAD
SICDGDLVDRRIRSSQTWNLLPTQAIYASVIPGELMRGYMSLFPNFPSWLGKYSSTGKHD
RILQELSMHVCLRTRASKGAVNMDYLSHMRDALVRPLAFHGVEGIQDAVSFMDTYYLMKE
DVENIMDACSWGGKPSPFSKLDPKVKSAFTRCYNKETHLTPYSLQFVKASKRRTGASLDS
ELNEELNLEESQSEDKGDDIEADAMIKARKAKSSKTEKSGETKKGKGKGKKTK
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggaaactagtgaaggatgcttgggacggtggggagagggagttgcgttatgccctccg
agcaaggatattcggaagttttttgttatgccggctgagaagaaacctggaagtggaaca
gtagaaaagaaggaaaaaagtcaaagtaatgaaggtctcacagacaaaaaaaagacagcc
aaggatattaaattgaagagttcaacaagagacgatgatccaaaacagaagcacaccatc
aggaagaagagaattatctatgattcagattctgaagaagaagagatgcagattgtgaag
aaatccaagaaaccacctgaggaatcactgttgtcattaaagcctgtaaaaattaccaag
caggatccaatcacttacgtctcagagacagatgatgaagatgactttattaagaagaaa
agttcccggaaacccaaagaaaatggagcatccatggtaaatagcacaaaaacatcaggc
ggaagatcagaagcagagactaagccacacactaaagcaaaaccaccttcaccagtaaaa
ctaactcccacatctgcattggactattttggaactggcagtgttcacaggtcggaaaag
aaactggtggctagcaaaaggaaaacaatgtcaggaagttttgatgctgctgctgctgca
ttgaatgatgaagccattgctaagcaacttcagcttgaggaagatgcagagctggaaaga
caactgcatgaagatgaagagtttgctagaactttagcaatgttggatgaagtgccaaag
aacaaaaaggctcgaaaggatgaagaaaaaaaatcagtttcaactttcaatacaagtcct
cagaaaacaggagagcatagaccttctcagacaggtgagtcacttaaccttccattggca
ctggcagatgaagcattgcctttgcagactagttccaagcttgcacttatgaaaggaaaa
gaagatagccagagaaaagaacgggtatcttcaaatcctgtctcaaaagaaaaagaaatt
tcatcaaagacagagaagatcacaccaaagaaagagaaaatttcccccaaaaagtcagag
tctacaagtcctgaggacagtgagaagaaacgtgttaatttccaagcgtacaggaatttc
ctgaatcgagagggacctaaagcactaggctccaaggagattccccagggagcagaaaac
tgcttggaaggcatgacctttgtaattacaggtgtccttgaatctgttgaacgagatgaa
gcaaaatctctgatagaacggtatggaggaaaagttactggcagtgtcagcaaaaagaca
aaatatttgatcatgggacgtgagagtggacaagccaaaaaagagaaggcagagagttta
ggaacaaccattcttgatgaagatggcctgtttaatttgattcgaactacaccaggcaaa
aagtctaaatatgaaatcctagcagaagctgagagtctaaaggcaacaggaaaaatgaca
aaaactcctgaaaaggctgtacaggctgttaaaaaagttactccaacaaagaaggaagct
gaaagcaaaaaaactttgttaggggcattgaaaagagaaaccaccaactttgaaaatgat
ttggaattaacaaaacaccctgaagagaagcagcatgtactggacactgaaagttttact
ccatcatcaaaccatgggaagacagagtgtttgctctgggtggataaatacaaacccacg
tccatcaagggaataataggacagcaaggagatcagagctgtgttaataaactgatacgc
tggctcaagaattggcacagcaacaatgtgtctgatgataagaaggcagctgggaaattc
aataaacatgggggcaaggatgatggttttggtttgaaagctgcattgttgtccggtcca
ccaggtgttggtaaaaccactacagctgttttagtctgtgaggaactgggctatagctat
gtggagctcaatgctagtgacactcggagtaagaacagtatgaaagagattgtagcagaa
tccctcagcaacaccagcatcaaagacttttattctggagcatcccagtcagtgagcatg
aaacatgtcctgattatggatgaagttgatggaatggcaggcaatgaggacaggggaggg
atacaggagttaattggtctgatcaagcattcaaagattcccattatctgtatgtgtaat
gaccggaaccaccaaaagattcgatctctggcaaactactgctatgatcttcgattttat
agaccacgagtggagcaaattaagggtgccatgatgtccattgcctataaagaaggttta
aagattccacctccagctatgaatgaaatcatcttggctgctaatcaggatattcgacag
gttttacataatcttagtatgtggtgtgcaagaaataaatcactgaattacgatcaggcc
aaagatgatgccaacagagccaaaaaggatatcaagctgggcccttttgatgttgttcga
aaagtttttacttccggggaagagacgtctcacatgactcttatagacaagtcagacctc
tttttccatgattactctctggcacctctctttgtccaagaaaactacctctatgttaca
cccactgctgccggaggagatatgaagaaacacttactgcttttaagtagaacagcagat
agcatatgtgatggtgacctggtagatagacggatccgtagtagccaaacctggaatctc
cttcctactcaggccatttatgcaagtgttatccctggagaactgatgagaggttacatg
tctctgtttcctaatttcccaagctggctgggcaaatattcatccacaggaaagcatgat
cggattcttcaggagctgtccatgcacgtgtgcctgagaactcgtgcaagtaagggtgca
gtaaacatggactacttgtcacacatgcgagatgctctggtcaggcccctggcttttcat
ggagtggaaggaatccaagatgctgtgagtttcatggatacatattatttgatgaaggaa
gacgttgaaaatatcatggacgcttgcagctggggaggcaaacctagtcccttttccaaa
cttgaccccaaggtaaaatcagccttcacacgctgttataacaaagagacacatctgacc
ccatattcgctacaatttgtcaaagcatctaaacggagaacaggagcctcactagattca
gaattaaatgaagagctaaacctggaggagtctcagtctgaagataaaggggatgatatt
gaagcagatgcaatgatcaaggccagaaaagcaaagtcttcaaagacagaaaaaagtgga
gaaaccaaaaaaggcaaggggaaaggaaagaagaccaaatga
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integrated database retrieval system
