Geotrypetes seraphini (Gaboon caecilian): 117362236
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Entry
117362236 CDS
T09159
Symbol
DHX15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117362236 (DHX15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117362236 (DHX15)
03009 Ribosome biogenesis [BR:
gsh03009
]
117362236 (DHX15)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117362236 (DHX15)
Spliceosome [BR:
gsh03041
]
Complex A
U2 snRNP components
U2 related factors
117362236 (DHX15)
Complex B
117362236 (DHX15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117362236 (DHX15)
Ribosome biogenesis [BR:
gsh03009
]
Eukaryotic type
90S particles
Helicases
117362236 (DHX15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Flavi_DEAD
AAA_25
AAA_29
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
117362236
NCBI-ProteinID:
XP_033804189
UniProt:
A0A6P8R2J7
LinkDB
All DBs
Position
1:238352859..238613726
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AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYATSKKRVNVDGKDRDRDRDRDDRSKDRERDRDRDRDRDRDKDRDSRS
SSNSAYISGGLKPVKPAILPQGINPFTNLPHTPRYYEILKKRLQLPVWEYKERFTDILTR
HQSFVLVGETGSGKTTQIPQWCVDYMQSLPGPKRDVACTQPRRVAAMSVAQRVADEMDIM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRNDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYSTL
PPQQQQRIFEPPPPKKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCDYNCSNEILSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYH
AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKA
LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTD
IKPEWLVKIAPQYYDMSNFPQCEAKRQLERIIAKLQSKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacaccggttagacttgggagacgattatgcaaccagcaagaagcgagtg
aacgtggatgggaaggatcgagatcgtgaccgggatcgtgatgatcgttcaaaggaccga
gagagagatcgtgacagagacagagatcgtgacagagacaaagacagagattcacgttcc
tcatccaattctgcatatattagtggaggtctaaaaccagtaaaaccagcaatacttcca
cagggcatcaatccatttactaatttgccacatacaccacggtactatgagattttaaag
aaacggctgcagctccctgtttgggagtataaggaacggtttacagatattttaacaagg
catcagtcctttgtgctagtcggtgagacaggctctggtaaaacgacacagatccctcag
tggtgtgttgattacatgcagtcattgcctggaccaaagagagatgttgcttgcacacaa
cccagaagagtggctgcaatgagtgtagcacagagagtggctgatgaaatggatataatg
ttaggccaggaagttggttactccattcgatttgaagattgcagcagtgcaaaaactatt
ttaaagtatatgactgatggtatgttacttcgtgaagccatgaatgatcctttactggag
cggtatggtgttatcattcttgatgaagctcatgaaaggacattggctacggatattctg
atgggcgttttaaaggaagttgtaaggcaaagaaatgatttaaaggtgatagttatgagt
gctactctagatgctggcaaatttcaaatttattttgataactgccctctactgactatc
ccaggacgtacacatccagtggagatcttttatactccagagccagagagagattacctt
gaggcagccatccgaactgttatccaaattcacatgtgcgaagaggaagaaggagatctt
ttactttttctgactggtcaagaggaaatcgatgaagcttgtaaaaggataaaacgtgaa
atagatgatttgggtcctgaagttggagatattaaaatcattcctttgtattccaccctt
ccacctcagcaacagcagaggatttttgagccaccgcctcctaagaaaccaaatggagcc
ataggaagaaaggtagttgtgtccactaacattgctgaaacgtcattaactatagatggt
gttgtatttgtcattgatcctggatttgctaagcaaaaggtatacaatcctcgtatcaga
gtagaatctcttcttgtgactgccattagtaaagcttctgctcagcagagggcagggcgt
gctggtcgtaccagaccaggcaagtgcttcagactttatacagagaaagcctacaaaaca
gaaatgcaggacaatacttacccggagattctgagatctaatttgggatcagtagtgtta
cagctgaagaaacttggtatagatgacttggtgcactttgattttatggacccaccagct
ccagagactctaatgagagcccttgaacttttgaattatctggctgctctaaatgatgat
ggtgacttgacagaactgggatctatgatggcagaatttccattagatccacagctagcc
aagatggttatagcaagttgtgactacaactgttctaatgagatcctatctattactgcc
atgctgtcagtcccacagtgttttgttcgacctacggaggccaagaaagctgcagatgag
gccaagatgagatttgcccacatagatggcgatcatttgacgctgctgaatgtctaccac
gctttcaagcaaaatcacgaatcggtccagtggtgttacgataacttcattaactacagg
tccctgatgtctgcagacaatgtgcgccagcagctgtcacgaatcatggacagatttaac
ttgcctcgtagaagcacagattttacaagcagggattactacatcaatataaggaaggct
ttggttactgggtattttatgcaggtggcacatttggaacgaacagggcattacttaaca
gtgaaggacaaccaggtggtacagttacatccatctactgttcttgaccacaaacctgaa
tgggtgctatataatgaatttgtgctcaccacaaagaactacattcggacgtgtacagat
attaaacctgaatggttggtgaaaattgctcctcaatattatgatatgagtaacttcccc
cagtgtgaagcaaaaagacagttggaacgtattattgctaaacttcagtccaaggagtat
tcacagtactga
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