Geotrypetes seraphini (Gaboon caecilian): 117362411
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Entry
117362411 CDS
T09159
Symbol
LSM1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117362411 (LSM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117362411 (LSM1)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117362411 (LSM1)
mRNA degradation factors
5'-3' decay
Lsm complex
117362411 (LSM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117362411
NCBI-ProteinID:
XP_033804612
UniProt:
A0A6P8R3H9
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Position
6:210941089..210968140
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKEMCAPLQQVSIEEILEEQRVEQQTKQEAEKVKIQALKER
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattatatgccgggaacggctagtcttattgaggatattgataaaaaacacttggtg
ctccttcgagatggaaggaccctgataggatatctaaggagtatagaccagtttgctaac
ttggtgttgcatcaaacagtcgagcgcattcatgtcggcaaaaagtatggtgacattccc
cgtgggatatttgttgttagaggagaaaatgtggttctgctcggagaaatagacctagag
aaagaaatgtgtgctcctttgcagcaggtgtctattgaggagatcttggaagagcagagg
gtggagcagcaaacaaaacaggaagcagagaaagtgaaaatccaggctctgaaagaacga
ggcctttcaattccacgcgctgatactctggatgaatattag
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