Geotrypetes seraphini (Gaboon caecilian): 117362519
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Entry
117362519 CDS
T09159
Symbol
MID1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117362519 (MID1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsh04121
]
117362519 (MID1)
Enzymes [BR:
gsh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117362519 (MID1)
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117362519 (MID1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
PRY
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
zf-RING_2
FN3_DSCAM-DSCAML_C
zf-C3HC4_3
Pur_ac_phosph_N
zf-C3HC4_2
zf-RING_5
TRIM_CC
Choline_kinase
NDNF
Motif
Other DBs
NCBI-GeneID:
117362519
NCBI-ProteinID:
XP_033804906
UniProt:
A0A6P8R4F1
LinkDB
All DBs
Position
6:171724307..172229903
Genome browser
AA seq
714 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTTNESVESISAFQCPTCR
YVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERPIDSNHSGGGSSMTSI
ERVICQFCDQDPARDAVKTCVTCEVSYCEECLKATHPNKKPFTGHRLIEPIPDSHIRGLM
CLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKVPAGRNAHARFHAS
LSPKADVDFGLCGGCLLPWLSAEGRRKQNLESNLTSLIKRNTELETLLAKLIQICHHIEV
NASRQETKLMEESEQLIEIIQQRRQIIGTKIKEGKVVRLRKLAQQISNCKQCIERSTSLI
SQAEQSLKENDHARFLQTAKNITERVCMATASSQVLIPEINLNDTFDTFALDFSREKKLL
ECLDYLTAPSPPVIREELCTASYDTITVHWTSDDEFSVVSYELQYTIFTGQANVVSLCNS
ADSWMIVPNIKQNHYTVHGLQSGTKYIFIVKAINQAGSRSSEPGKLKTNSQPFKLDPKTA
HRKLKVSHDNLTVERDETSSKKSHTPERFSSQGSYGVAGNVFIDSGRHYWEVAITGSTWY
AIGIAYKSAPKHEWIGKNSASWVLCRCNNNWVVRHNSKENAIEPVPHLRRIGILLDYDNG
SLAFYDAVNAMHLYTYDISFTQPVCPTLTVWNKGLTVLTGLPIPDHLDCIEQLP
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtctgaattgacctgccctatctgtctggagctttttgaagaccca
ttgctgttgccttgtgctcatagtctctgtttcaactgcgctcatcgcatcctagtctcc
cactgcaccaccaacgagtcggtggagtccatcagcgctttccagtgtcctacttgtcgg
tatgtcattaccctcagtcagcgtggcttagacgggctgaagcggaacgttactctgcag
aatattatcgacaggttccagaaggcgagtgtgagtggccccaattccccaagcgaaacc
cgccgagaacggcctattgatagcaatcacagcggcggcggaagcagcatgacctccatt
gagagagttatctgccagttctgcgaccaggacccggcacgagatgccgtgaagacttgt
gtcacctgtgaggtgtcctactgtgaggagtgtctgaaagccactcatcccaacaagaag
cctttcacaggccatcgtttgattgagcctattccagactcgcacatcaggggattaatg
tgtctggagcatgaggatgagaaagtcaacatgtactgtgtaactgatgaccagttaatc
tgtgctctgtgtaaactggttgggaggcatcgtgaccatcaagtggcagcactcagtgag
cgatatgacaagttgaaggtccccgcaggtaggaatgcgcatgcgcgcttccacgcatct
ctctctcccaaggcggatgttgacttcgggctgtgcggaggctgtctgctgccgtggctg
tcggcggagggcagacgcaagcaaaatttggagagtaaccttaccagcctaatcaagaga
aacactgagctggaaactctgctggctaaactgattcagatctgccaccacatagaggtg
aatgcatcaaggcaagagaccaagttaatggaggaaagtgagcaactcattgaaatcatc
cagcagagacgacaaatcatcggaacaaaaatcaaagaagggaaggtggtgaggctgagg
aagttggcacagcagatatctaactgcaaacagtgcatcgagcgctcgacgtctctcatt
tcacaagctgagcagtctctgaaggagaacgaccatgcccgttttctacaaacagctaaa
aatatcactgaaagggtctgtatggcgactgcatcctcccaggttctaattccagaaatt
aatctcaatgacacatttgacacgtttgcattagatttttcgagggagaagaaactgctg
gaatgtctggattatctcacagcccccagtcctccagttattagagaagaactctgtaca
gcttcttatgacaccatcaccgtccactggacatcagatgatgaatttagtgtggtctcc
tatgagcttcagtacactatcttcactgggcaagccaatgtagtgagcttatgcaactct
gccgacagctggatgattgttccaaatatcaaacagaaccactacacagtgcatgggctc
cagagtggcaccaaatacattttcatcgtcaaagcaattaaccaggctggcagtaggagc
agcgaacctggcaaattgaaaaccaatagtcaaccattcaagctggaccctaaaactgcc
caccgaaaattgaaggtgtctcacgataacctgacagttgaacgcgatgaaacttcctcc
aagaaaagccacacaccagagcgctttagcagccaaggaagctacggggtcgctggcaac
gtatttattgatagcggacgccattactgggaggtagcaattaccggaagtacatggtat
gctattgggattgcatataaatcggctccaaaacatgaatggatcgggaaaaattctgcc
tcttgggtactctgtcgctgcaataataactgggtagtaaggcacaacagcaaggagaat
gctatagagccagtgccccatctccgtcgtatcggcattctgctggactatgacaatggt
tcactggcgttctatgatgctgtcaatgccatgcatctttacacctatgacatatcattc
acacagcccgtgtgccccacactcactgtgtggaataaaggtttgacagttttaacaggc
cttccaataccagatcacttggactgcatagagcagctgccatga
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