Geotrypetes seraphini (Gaboon caecilian): 117362649
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Entry
117362649 CDS
T09159
Symbol
PCDH17
Name
(RefSeq) protocadherin-17 isoform X1
KO
K16499
protocadherin delta 2
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gsh04515
]
117362649 (PCDH17)
Cell adhesion molecules [BR:
gsh04515
]
Cadherins
Protocadherins
117362649 (PCDH17)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
PepSY
Motif
Other DBs
NCBI-GeneID:
117362649
NCBI-ProteinID:
XP_033805274
UniProt:
A0A6P8R597
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Position
6:74187742..74505206
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AA seq
1133 aa
AA seq
DB search
MCPSIYWFFLLWAPALTLKNLNYSVPEEQGAGAVIGNITKDAKLVVPPSERGRKAIFRVL
ENSAPHLLDVDPESGLLYTKQRLDREVLCRRSPKCQLSLEVFANDKEICMIKVEVQDIND
NAPAFPSEQLDLDISENAAPGTRFPLTGAHDPDAGDNGLQTYRLAGDEHGLFSLDVKVRG
DGSKFPELVVAAPLDREEQSHHALLLTALDGGEPPRSAALQLNVRVADSNDNSPVFEASS
YTVELPENSPLGRVVIDLNATDADEGANGKVVYSLSGYAPDRVRELFSVDPQSGLVQVRG
NLDYEESAVLELDVQARDLGPNPVPAHCKVTVRLQDRNDNAPSIGFVSVRQGAISEAAPP
GTVIALVRVTDRDAGKNGQLQCRVLGSVPFRLEENYDNFYTVVTDRPLDREAQDEYNVTI
VARDGGSPPLNSSKSFAVRVLDENDNAPRFNKVSYVLQVPENNIPGEYLGSVLAQDPDLG
QNGTVSYSILPSHVGDVSIYTYVSVNPTNGAIYALRSFNYEQTKSFEFKVLAKDSGSPHL
ESNATVRVNVLDVNDNAPVIVLPTLQNDTAEIHVPRNAGVGYLVATVRAVDNDFGDSGRL
TYEIMDGNEERLFDIDPVTGEVRTLNPYWEEMAPVVELVVKVTDHGKPTLSAVAKLIVKA
FTGSLPEGEPRVNGEQQHWDMSLPLIVTLSTISIILLGAMITIAVKCKRENKEIRTYNCR
IAEYSHPQLGKSKKKKINKNDIMLVQSEVEERNAMNVMNVVSSPSLATSPMYFDYQTRLP
LSSPRSEVMYLKPTSNNLTVPQGHVGCHTSFTGPVANSTETASNRMSIIQTDNFPAEPNY
TGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSVREALKMKTTAK
NQPLEQEQEECVNCTDECKVLGHSDRCWMPQFPTANQAENPDYRTNLFVPTVEANVETET
YETVNPTGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQEIPSASNSPTKTCIEP
CTSTKGPLDVCEIKAGRLAETSNQYLSTDSQYISPSKQSKDPQYIASDQKARVFADGHSR
VSRDSSEMDSVLEQLDHSNRDLGRESVDAEEVVREIDKLLQDCRGSDPVAVRK
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccgtccatatactggttctttctcctttgggcacccgccctgactttaaagaac
ctgaactactcggtgccggaggaacaaggggccggcgcagtaattggcaacatcaccaag
gatgccaagctagtggtgcccccgtctgagaggggccggaaggcaatcttccgggtgctg
gagaactcggccccgcacctgttggatgtagacccggagagcgggctcttgtacacaaag
cagcggctggatcgtgaggtgttgtgccggcgcagcccgaagtgccagctctcgctggag
gtctttgccaatgacaaggagatctgcatgatcaaggtggaggtacaggacatcaatgac
aatgcgcctgccttcccctctgagcagcttgacctggatatctctgagaacgcagcaccg
ggcacccgcttcccactgacgggcgcccatgacccggatgcaggtgacaacggattgcag
acctaccgactggcgggtgatgagcatggcctcttctcgctggatgtgaaggtgcgtggt
gacggcagcaagttccccgaactggtggttgcggcaccacttgaccgtgaggagcagagc
caccatgcactgttgctgacggcgctggatggtggtgagccaccacgctctgctgccttg
cagctcaacgtgcgcgtcgcagactctaatgacaacagtcctgtctttgaggcttcctcc
tatactgtggagttgcctgagaactcgccgcttggccgtgttgtcattgacttgaatgct
acagatgctgatgagggtgccaacggcaaggttgtctactcgctcagcggctacgcacct
gatcgtgtgcgtgagcttttctctgtcgacccacagagtggcctagtgcaggtacgcggc
aacctagactatgaggagagtgctgtgttggagcttgatgtacaggcaagagacttgggg
cccaatcctgtgccagcacactgcaaggtcactgtgcgcctgcaggaccgcaatgacaat
gcaccatccattggctttgtctctgtacgccagggggcaatcagtgaggccgcaccacct
ggcactgtcatcgccctcgtgagggtcactgatcgcgatgcgggtaagaatgggcagttg
cagtgccgtgtgctgggcagtgtgccctttcgccttgaagagaattatgacaacttttac
acggtggtgacggacaggccactggaccgtgaggcacaggatgaatacaatgtcactatc
gtggcgcgtgatggtggcagcccaccactcaattccagcaaaagctttgcagtgcgtgtg
ctggacgagaatgacaatgcaccacgtttcaacaaggtctcctatgtgctacaggtacct
gagaacaacatccctggagagtacctaggttctgtgttggcccaagacccagacctgggc
cagaatggcactgtctcctactccatccttccctctcatgtgggtgatgtatctatttat
acctatgtctccgtcaaccccaccaatggtgccatctatgccctacgctctttcaactat
gagcagaccaagtcgtttgaattcaaagtgttggccaaggactcgggctcaccgcacctg
gagagcaatgccactgtgcgagtcaatgtcctggatgtcaatgacaatgcacctgtcata
gtgttgcctaccttgcagaatgacacagctgagatccatgtgccccgtaatgctggagtg
ggctacctggtggctactgttcgtgctgtggacaatgactttggtgacagtggccgtttg
acctatgagatcatggacggcaatgaggaacgcctctttgacattgaccctgtaacaggc
gaggtgagaaccctcaacccctactgggaggagatggcacctgtggtggagctggtagtg
aaagtaactgaccatggcaagcctacattatcagctgtggccaagctcattgtcaaggcc
tttacgggctccctacctgaaggggagccaagggtgaatggagagcagcagcactgggac
atgtccttacccttgattgtcactctcagtactatctccatcattctgctgggggccatg
atcactatcgctgtcaagtgcaagcgagagaataaagagatcaggacttacaactgcagg
attgctgagtacagtcacccccagttagggaaaagtaaaaagaaaaagatcaacaagaat
gacattatgctggtccagagtgaagtggaggagaggaatgcaatgaacgtcatgaatgtg
gtaagcagtccatctcttgccacctctccaatgtattttgattatcaaaccaggcttccc
ttgagctctccaaggtctgaagtgatgtacttgaagcccacctccaacaatttgactgtt
ccccaagggcatgtaggctgccataccagtttcacgggaccagtggctaattcaactgag
acggcttcaaatcggatgtccatcattcagacagacaattttcccgcagagcccaattac
acaggcagcaggcagcagtttgttcaaagcagctcaaccttcaaggacccagaaagagcc
agtctaagggacagtggtcatggggacagtgatcaggccgacagtgatcaagacaccaac
aaaggttcctgttgtgatatgtctgttagggaggcacttaagatgaagactactgccaaa
aaccagccactcgagcaagaacaagaagagtgtgttaattgcacagatgaatgcaaagtg
cttggtcattctgacaggtgttggatgccacagttcccaacagccaatcaggcagaaaat
ccagattatcgcacaaatctgtttgtacccacagttgaagctaatgttgagactgaaaca
tacgaaactgtgaatcccactggaaaaaagacattttgtacatttggaaaagacaagaga
gagcacacgattcttattgccaatgttaaaccttatttaaaagccaagcgtgccctgagc
cctcttcttcaagagattccctcagcatcaaacagcccaaccaagacatgcattgagcct
tgcacctcaacaaaaggacctttagatgtttgtgaaataaaagcaggcagattggctgaa
acaagcaaccagtacttatcaactgatagtcagtatatatcacccagtaaacagtcaaaa
gaccctcagtatattgcgtccgatcagaaggctcgggtgtttgccgatggccattccaga
gtgagccgagactcgagcgagatggactctgttcttgagcagctagatcactcaaaccga
gatttaggccgagaatcggtggatgcagaggaagttgtcagagaaattgacaaactttta
caagactgcagagggagtgaccctgtggctgtgagaaaataa
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