Geotrypetes seraphini (Gaboon caecilian): 117362727
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Entry
117362727 CDS
T09159
Symbol
DDX56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gsh03009
]
117362727 (DDX56)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117362727 (DDX56)
Ribosome biogenesis [BR:
gsh03009
]
Eukaryotic type
Pre-60S particles
Helicases
117362727 (DDX56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
117362727
NCBI-ProteinID:
XP_033805488
UniProt:
A0A6P8RIR4
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All DBs
Position
6:187262719..187335809
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AA seq
556 aa
AA seq
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MAASARLGFHELGLDDRLLKAIAQLSWARPTLIQEKAIPLALEGKDLLARARTGSGKTAA
YIIPIIQHLLQVKTSVSEQAVRAVILVPTKELGQQVGQMIRQLTAYCARDVRVADVSGLA
DVSAQRPILMEKPDIVVGTPSRIQIHLKNHNLSLRNSLEILVIDEADLLFSFGFEDDLKN
LLCQFPKIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPDSSQLTQFQIKCEEED
KFLLLYTLLKLSLVRGKTIIFVNSIDRCYRLKLFLEQFSIPACVLNSELPIHSRCHIIGQ
FNQGFYDYIIATDEHILAKPIGRGKKMKKAGRGEIGRDKEYGVARGIDFQNVSNVINFDF
PQSVESYIHRAGRTARVDNPGTALTFVSHTELSLLTEIEEALMGENSESVLQPYKFRMEE
IEGFRYRCRDAMRSVTKQAIKEARLKEIKEELLNSDKLKTYFEDNPRDFQLLRHDKALHP
AIVKPHLKNVPEYLIERKSEPTSKLQIHRKEKPAKDSKKETVVRWGEEAPPKTLCILVCC
QQGQKLWTGPLGKCLK
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctccgcgagactgggtttccatgagctggggctggatgaccgtttgctaaag
gcaattgctcagctgagttgggctcggcccacattgatccaggagaaagctatcccacta
gccttagaaggaaaggacctattggcccgagctaggactggttctggaaagaccgctgcc
tacattattcccatcattcagcatctcctccaagtgaaaacgtctgtttcagagcaagca
gtgcgggcggtgatcctggtgcccacaaaggaattggggcagcaagttgggcagatgatt
cgccagttgacagcctattgtgcccgagatgtgcgtgttgctgatgtctctggtctcgct
gatgtttctgctcagaggccaattttaatggagaagccagatattgtggtaggaacgccc
tcccgtattcagatccacttgaagaaccacaatctgagcctgcggaactcactggagatc
ttagtgattgatgaagctgaccttcttttctcatttgggtttgaggatgacttgaagaat
ctactctgccagtttccaaagatttaccaagcgttcctgatgtcagcaacctttaatgaa
gatgtccaggcgctcaaggagctgatattgcacaacccagttacattgaagctacaggag
tcccagcttccagatagctctcagctcacccagttccagattaaatgtgaggaagaagac
aagttcttgctcctgtataccctgctcaaactctcccttgttcgtggcaaaaccatcatt
tttgttaactccattgatcgctgttatcgccttaagctcttcttagaacagttcagcata
ccagcttgcgtgctcaactcagagcttccgatacactccaggtgtcatattattggccag
ttcaaccaaggtttctacgattacatcattgcaactgatgagcatatcctggccaagcca
ataggacgtggaaagaagatgaaaaaagcgggaagaggagaaattgggcgagataaggag
tatggagttgctagaggcattgattttcagaatgtttccaatgttatcaactttgatttt
ccacaatcagttgagtcctacattcatcgagctggcaggacagcccgtgttgacaatcca
ggaactgctttgacctttgtgtcacatacagagctctctctgttgactgagattgaagag
gcactcatgggagaaaactcagagtctgttctgcagccatacaaatttcggatggaggag
attgaaggattccgctatcgatgtcgggatgctatgcggtctgttactaagcaggccatt
aaggaagcacgattgaaggagattaaggaggagctactgaactcagataaactcaagaca
tattttgaagacaaccctcgtgatttccagctgctgcgtcatgacaaagcccttcatcct
gccattgtgaaaccccacttgaagaatgttcctgagtacctgattgaaaggaagtcagaa
cccacttcgaagcttcaaatacacaggaaagaaaagccagccaaagactccaaaaaggaa
acggtcgtgagatggggagaagaggcgccccccaaaaccctatgcattctggtctgttgt
cagcaaggacagaaactctggactgggcccctgggaaaatgtttaaaataa
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