Geotrypetes seraphini (Gaboon caecilian): 117362742
Help
Entry
117362742 CDS
T09159
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04382
Cornified envelope formation
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117362742 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117362742 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117362742 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117362742 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsh04147
]
117362742 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117362742 (COL4A2)
Exosome [BR:
gsh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117362742 (COL4A2)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117362742 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117362742
NCBI-ProteinID:
XP_033805535
UniProt:
A0A6P8RKM3
LinkDB
All DBs
Position
6:complement(164032664..164459376)
Genome browser
AA seq
1709 aa
AA seq
DB search
MVQTSFQMKWCTLWRIILPLSLCILIAVRVKAGGKSYTGPCEGRDCSAGCQCLPEKGSRG
QPGPLGHQGFPGPPGLTGIPGLPGRKGEKGERGHTGITGPTGDAGQRGVTGFSGADGVPG
HPGQGGPRGKPGHDGCNGTTGDAGEEGTDGPRGPPGLPGTHGLKGQKGEPFLVTLEMRDN
LRGDSGDPGFIGFQGPQGIPGFQGPIGPVGIPGRPGPPGPPGLPGPEGNRGLGFHGEKGD
KGDPGHPGHPGLPSTVEVKTPTEIFHEENVGEQGMKGEKGFPGLPGSSAFFEEKGEEGIM
GFPGQRGLPGINGTPGTLGRKGSPGPDGFPGVPGLNGMKGERGEKGVEGPVTYAEHATPA
KGSIGNPGFPGPVGPTGEEGDRGDEGLPGPTGPPSHFPGFPGEPGRHGEMGPKGFKGEPG
FPAFQPGFPGPDGQPGATGPPGPPGRPSTPIGRKGSTGSQGFDGTQGFPGIQGTKGFKGD
LGDCRCTLSDETRRGSAGPPGLLGFPGSPGQPGRKGDTGDHGASGQPGPMGPQGFRGDEG
LPGPQGEIGELVFATRKGSRGEQGNSGVPGGIGFEGLPGLNGLDGAPGFPGPPGDSIKGL
SGDPGFPGPPGQRGIEGEIGPPGPGLPGHKGVRGLPGDPGFEGFPGIPGPPGPPGDCCCG
TDEQNDIIRTGPECKLRVGEALPGVRGLTGLPGIIGKKGEQGHLGEPGPDGVTGFKGLRG
DQGAEGLPGPAGFTGSRGDSGIPGQPGLRGVPGSAGKPGFQGLHGEKGKAGDILGAPAGL
PGVIGYPGPHGHKGIQGDRGVPGFRGAGGVPGFSGNKGEQGASGTPGAKGLPGPAGVHGF
PGLPGRQGSVGTPGSAGYRGLAGDKGSLGDQGAPGPVGMKGLLGDSGDVGFPGRRGLPGD
PGLHGLEGMHGLPGTKGVRGSAGMEGFHGMTGLKGRAGWKGIKGATGTPGFTGVKGAPGI
SGQKGDRGEQGKSGDKPKIMPYMLEVVKGEKGNFGFSGDPGNLGQPGSKGMPGYPGEPGH
PGLPGIPSFIPGEKGEFGDPGLTGAQGYSGQVGPPGIRGFPGQTGIRGQKGFSGSTGLPG
STGYFGDTGDRGDTMNIPGAPGFRGEEGETGLKGTRGVTGVKGISGDVGGTGIEGIKGSK
GGLGTTGQPGLPGLIGAPGLQGQSGTHGISGEKGSVGQRGVPGQPGFPGLRGTSGSDGSP
GTKGFPGLVGTDVFGTQGFPGSPGQRGDAGEHSAVPGFPGTTGLKGTRGDPGKQGTVGQP
GFNGIPGSPGSSNRSGVPGDMGFSGSQGLPGDPGPQGKPGFSSIPGVKGDVGQIGVSGET
GPKGIRGDTGFQGSSGISGFTGIKGAKGEQGFLGFIGRAGIPGDRGPVGPKGDRGISGFQ
GPPGSPGLPPEPLTIPNERGPQGSRGIVGPRGNQGKIGPQGPSGDPGLRGLPGKEGLQGV
GGKPGASGVGGDPGTVGFRGPVGDEGASGHQGRVGPPGMAGRSINIGYLLVKHSQSDQEP
MCPIGMTKLWSGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTMPFLYCNPGDICYYASRND
KSYWLSTTAPLPMMPVVEDEIKPYISRCSVCEAPTVAIAVHSQDVSIPHCPEGWRSLWIG
YSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTINQT
FQSSPSADTLKAGLIRTHISRCQVCMKNV
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggtacaaacaagtttccaaatgaagtggtgtacactttggcgcattattttgccgtta
tcgctttgcatactgatagcagtacgtgtgaaagctggtggtaagtcctacacaggacca
tgcgaaggaagagactgcagtgcaggatgccagtgccttccagaaaaaggaagccgtggt
cagccaggtcctcttggacatcagggatttcctgggccaccaggattaacaggaatccca
ggtttacctggacgcaaaggcgagaaaggtgagagaggacatacggggattactggaccg
actggagatgcaggacagagaggagttacaggcttttcaggagctgatggtgttcctggt
catcctggccagggtggaccaagaggtaaaccaggtcacgatggctgcaacggcacaact
ggtgatgctggtgaggagggaactgatggtcccagaggtccacctggtttacctggcact
catggcctaaaagggcagaaaggtgaacctttcctagtgaccctggaaatgagagacaac
ctcaggggagattcaggtgatccaggttttattggctttcaaggaccccaaggcattcct
ggttttcaaggccctattggcccagttggtattccaggaagacctggcccacctggacct
ccaggactaccaggaccagagggaaacagaggccttggctttcatggagaaaaaggagac
aagggtgatccaggtcatccaggtcatccaggtcttccatccacagttgaggtgaagacc
cccactgaaattttccacgaagagaatgtgggtgagcaaggaatgaagggagaaaaagga
tttcccggcttgcctggttcaagcgcattctttgaagaaaaaggagaagaaggaataatg
ggttttccaggacaaaggggtctgcctggtatcaatgggactccaggaactctagggcga
aaaggttcaccaggacctgatggttttccaggtgtgcctggtttgaatggaatgaaggga
gaacgtggtgaaaaaggtgttgaaggacctgtgacttacgctgaacatgcaacacccgcc
aaaggttccataggtaatccaggctttccagggcctgtgggacccacaggagaggaagga
gaccgtggagatgaggggcttcctggtccaactgggccaccaagtcattttcctggtttt
cctggtgagcctggtcgacatggtgaaatgggacccaaaggtttcaaaggagagccaggg
tttccagcttttcagcctggttttcctggtcctgatggtcagcctggtgccacaggacct
ccagggccacctggacgtccaagtactccaattggacgaaagggatccacagggtctcaa
ggctttgacggtactcaaggcttccctggaatccagggaacaaaaggatttaaaggtgat
ttgggcgactgcagatgtactttgagtgatgaaactagacgtggttctgctggtcctcca
ggactactagggtttccaggctcaccaggacagcctggaagaaaaggtgacactggtgac
catggtgcctctggtcagccaggccctatgggtccacaggggtttcgtggtgatgaagga
ctaccaggaccacaaggggagataggagagcttgtgtttgctaccagaaaaggttccaga
ggagaacaaggtaactctggtgtgccaggtggcataggttttgaaggtttaccaggacta
aatggactggatggtgctcctggcttcccaggtcctccgggtgatagcattaaaggcctt
tcaggtgatcctggttttcctggaccaccaggccagagaggtattgaaggagaaattggt
ccgccaggtccaggcctaccaggccacaaaggagttcgtggtttaccaggtgacccagga
tttgaaggatttcctgggattccaggtcctcctggtccaccaggtgattgctgctgtggg
actgatgaacagaatgatataatcagaacagggcctgaatgtaaactcagagtgggagaa
gctttgccaggtgtcagagggctcacaggattacctggaattatcggtaaaaaaggtgaa
cagggacatcttggagaaccaggcccagatggtgtaacagggtttaaaggactgcgtggt
gatcaaggtgctgaaggtttaccaggtccagcaggatttactggatccaggggagactca
ggtattcccggccaaccagggctccgaggagttcccggaagtgcaggaaagcctggtttt
cagggactgcatggagaaaagggcaaagcgggagatattctgggagcaccagcaggtctc
cctggtgttattggatatccaggcccacatggtcataaaggaatacaaggagatcgagga
gtaccaggatttagaggagctggtggtgtcccaggattttcaggaaacaagggtgagcaa
ggagcctctggtactcccggtgcaaagggattgccagggccagcaggtgtgcatggcttc
ccaggactgccaggaaggcaagggtcagtaggaacacctggctcagcaggctacagaggt
ttggctggagataaaggcagtttgggggatcaaggagcacctggtcctgtgggtatgaaa
ggtctcttgggggattcaggagatgttggttttcctggcagaagagggcttcctggtgat
cctggtcttcatggtttagaaggaatgcatggacttccaggaacaaaaggtgtcaggggt
tcagcaggcatggaaggcttccatggcatgacgggtctgaaaggaagggctggatggaaa
ggaatcaagggagccactggcactcctggctttacaggtgtcaaaggtgcacctggtatt
tcagggcaaaaaggtgaccgaggggagcaaggaaaatcaggagataagccaaagatcatg
ccatacatgctggaggtagtcaaaggtgaaaaaggaaattttggatttagcggtgatcca
ggcaatctgggacaaccaggcagcaaagggatgccaggttatcctggagagccaggtcat
cctgggctaccgggtatccccagttttataccaggagaaaaaggagaatttggtgatcca
ggactgactggggcccaaggatattctggtcaagttggtccccctggtattagaggcttc
cctggacaaacaggaataagaggtcaaaaaggtttttctggatccacgggccttccagga
agcactggctattttggagatactggtgatcggggagacaccatgaatataccaggagca
cctggttttaggggtgaggaaggtgaaactggtctaaaaggtacaagaggagtcactggc
gttaaaggtatttctggtgatgtaggaggcacaggaatcgagggcattaagggatcaaaa
ggtggcctgggtacaacagggcaaccaggtcttccaggactgataggtgcgcctggatta
caaggccaatcaggtactcatggaatatcaggtgaaaaaggatctgttgggcagagagga
gtaccgggtcaaccaggttttcccggactcagagggactagtggatcggatggttcaccg
ggcactaaaggatttccaggattagttggcacagatgtatttggaacgcaaggtttccct
ggtagcccaggccagaggggtgatgcgggagaacacagtgccgtgcctggattccctggt
actacgggtctaaagggaactaggggagatccaggtaaacaaggcacagttggacaacct
gggttcaatggtattcccggatctcctggatcttctaaccgatctggagtccctggtgat
atgggattctcggggtctcaaggcttgccaggtgatccaggacctcagggtaaacctgga
ttttcctctataccaggagttaaaggtgatgtaggacaaattggtgtatctggagaaaca
ggtcccaaaggaattaggggagacactggatttcaaggttcatctggtatttctggattc
actggcattaaaggtgcaaaaggtgaacaagggttcttgggcttcattggcagagcaggc
attcctggtgacagagggcctgtaggacccaagggtgacagaggaatttctggttttcaa
ggcccacctggctctcctggccttcctccagaacccctgactataccgaatgagcgaggt
cctcaaggttctcgtggcattgttggacctagaggaaatcagggtaaaattgggccacag
ggaccttcaggtgatccaggcctgagaggtctaccaggtaaagaaggactgcaaggtgtc
ggaggcaaacctggagcttctggagtaggaggggatcctggaactgtaggcttcaggggt
ccagtaggtgatgagggggcctctggccaccaaggtcgtgtaggtccacctggcatggct
ggccgcagcattaacataggctaccttttggtgaagcacagtcagtcagaccaagaacca
atgtgcccaattggtatgaccaaactgtggagtggttacagcctgttgtattttgaagga
caagaaaaagcgcataaccaagacctggggcttgctggatcctgcttgccacgtttcagc
acaatgcctttcctctattgcaatcctggtgacatctgttattatgctagcagaaatgat
aaatcctactggctctcaaccacagctccacttccaatgatgcctgtggtagaagatgaa
attaaaccctacatcagtcgctgctcagtttgcgaagccccaacagtggccattgctgtc
catagccaagacgtttccatccctcattgtcccgaaggctggcgcagcttatggattggc
tattccttccttatgcacactgctgccggtgccgaagggggtgggcaatcgctggtttct
cctggaagctgcctggaagacttcagggccactcctttcattgaatgcaacggagctcga
ggaacttgccactactttgccaataaatacagtttctggctgaccacgattaaccagacg
tttcagagctctccatctgctgatacactcaaagcaggactgatccgaactcatatcagc
cgctgccaagtctgtatgaagaatgtgtaa
DBGET
integrated database retrieval system
