Geotrypetes seraphini (Gaboon caecilian): 117362805
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Entry
117362805 CDS
T09159
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117362805 (SCAF4)
03041 Spliceosome [BR:
gsh03041
]
117362805 (SCAF4)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117362805 (SCAF4)
Spliceosome [BR:
gsh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
117362805 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117362805
NCBI-ProteinID:
XP_033805689
UniProt:
A0A6P8R6B2
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All DBs
Position
6:complement(227692202..228067379)
Genome browser
AA seq
1452 aa
AA seq
DB search
MDAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEFKV
AGLYVIDSIVRQSRHQFGIDKDVFGPRFTKNITATFQCLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGASVTVPVPENSNDDVCETSHLDHQMPVVEPNVISNEGSPPPPS
NIQVEPPEVDDNSIPTASQLPNSDAFAAVAQLFQTTQGQQQTDSAQLQQILQNFQQPPPK
PQSPVLDDDMLAAQVQAITAQLNTTSQPQEQKMTFDKKLLDRFDYDDEPDTADDIKKEIS
TLSPAPPQPPFGFSGDGMPPPVYPQLPVQLPNMDQFQQGIMGILPDPLHNQAPLPPPPPP
PPNGQMAGFGLLPTPPYPPMVPPMVAPTPPIPQPFQAPFPTQSETHIQKVHQQQEMSMEI
EQPSVQEVKHVTDGKKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSR
SHERREREKERERRQKGLPPIKSEIVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESI
NMIPPRGCAYIVMVNRQDAFRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVEL
GVTYVPWDKIKPEELESFCEGGVLDNDTLSPEWKIIPKKPEKKEVAQNGGAENVHPEEAP
PVPLPLQIPVPVPVPLHAPMPGPIPAHPPGPPIGALQPPLAFSPHLSMPPPGFAPGVPPP
PPPPFMRPGFNPLHLPPGFLPPGPPPPLVPPVSLPPTPGINILTSTSTNVTDNTSKDMSL
GSPIPTVVTGPRGNAESGDSMKIFGSGPPPMGPGGHPGPANHPGPGGHPGPANHPGPGGH
PGPANHPGPGSHPGLANHPGPGSHPGLANHPGPVNHPGPGGHPGPAGHPGHSGHPGPGSH
PGQGGHPGPSGHLGQGGHPGPGGHPGQGGHPGPGSHPGQGGHPGPGGHPGQGGHPGPGGH
PGQSGHPGPGGHPRSGGHPGSGGHSGPASHSGPGSHSGPTSHSGPGGHSGPASHSGPGGH
SGPASHSGPGGHSGPASHSGPGGHSGPAGHPGPGGHPGPSNRPGGHPSPGGHPGPINHPG
PGGHTGPSSHPAPVNAPVPLLGIHPQAGGAPNSVPGLQPPSTGLLGARPGLIPLQRPPGV
PPPHLQRFPLMPPRSMPPHMGHRGPPPGPGGYGMPPPHGIRGQFPPHGHFVRPGGSGGHG
GSGGPEEREGRQFRNERQMFNPGRDHERFGRRSFGNRIENDRDRFSNRHDERDHDWPGGR
DHDWPGGRDHDWPGGRDHDWPGGRDHDWPDGRDHDWPGGRDHDWPGGRDHDWPGGRDHDW
PGGRDHDWPGGCERREWGRRTPERDRHWDTEERNRRFSGYRDRNQEPRDRETQREKEENR
EKEKPEVTDGENSEKNHESPRGRVGNTDIVSELNKRESESKAPKPAEESPSVATSAAKHP
EKDSGSFVEAPR
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atggatgcggtcaacgctttcaaccaggagctcttctctcttatggaaatgaagcctccc
atttctcgtgcaaaaatgattctaattactaaagctgccatcaaagctattaagctttac
aagcatgttgtccaaattgtggagaagtttatcaagaagtgcaaaccagaattcaaagtt
gcaggattatatgtaattgactccattgttcgtcagtctcgtcatcagtttggaatagac
aaggatgtttttgggccaagattcacaaaaaacattacagccacattccagtgtttatat
ctttgtccttctgaagacaagagtaaaatagttcgtgtcctgaacctatggcagaaaaat
ggagtcttcaaaatagaaatcattcagcctcttctggacatggcagcaggagctagtgtc
actgtccctgtaccagagaactcaaatgacgacgtttgtgagacctctcacttagaccac
cagatgcctgttgttgaacccaatgtaatatctaatgaaggttcaccaccaccaccatca
aatattcaagttgagccacctgaagtcgatgataattcgatacctactgcatcacagctt
cctaattctgatgcgtttgcagctgtggcccagctgtttcagacaacacaaggccaacag
caaactgattcggcacagctccaacagattcttcaaaattttcagcagccaccacccaaa
cctcagtccccagttcttgatgatgatatgctagcagcacaagttcaggctatcactgca
cagttgaataccacgtcacaaccacaagagcaaaaaatgacttttgataagaaactgttg
gacagatttgactatgatgatgaacctgatacagctgatgatataaagaaggaaatttca
acgctttctccagcccctcctcaacctccatttgggttctctggagatggcatgccccca
cctgtatatccacagcttccagtgcagctcccaaatatggatcagtttcagcaaggaatt
atgggcatcctgccagatcctttgcataatcaggctcctcttcctcctcctcctcctcct
cctcctaatggacaaatggctgggtttggccttctacctaccccaccttacccacccatg
gtgccaccaatggttgctccaactccacctattccacagcctttccaagcgcctttccca
actcaaagtgagacacacatccagaaagtgcatcaacaacaggagatgtcgatggaaatt
gaacaaccatccgttcaggaagtaaaacatgttactgatggcaagaaatccagatccagg
tctgcatctagatcaccaaaaagaagaagatctagatctggttccagatctcgaaggtca
cgtcacagacgttctcgttcacgatcacgtgacaggcgccggcactcgccaagatcacgg
tcgcatgagcgccgtgagcgagagaaagagagagagcgcagacaaaagggtcttcctcca
ataaaatctgaaattgttagtgtttgtagtacaacactctgggtgggacagctggacaaa
agaacaactcagcaggatgtcggaagccttttagaagagtttgggccaattgaatcaatt
aacatgatccctcccagaggatgtgcctatattgtcatggtgaatagacaggatgctttc
cgtgcattacagaaattgagccgtggaaactacaaagtgaaccagaaatctataaagatt
gcttgggctttaaataaaggaataaaggcagactataaacagtactgggatgtggagctg
ggtgttacctacgtaccatgggacaaaattaagcctgaagaactggaaagcttttgtgaa
ggcggtgttttggacaacgatactcttagtccagaatggaaaataattcctaagaaacct
gagaaaaaagaagtagctcagaatggaggagcagaaaatgtacatcctgaagaagcacct
ccagtaccacttcctttgcagatcccagtcccggttcctgttcctctccatgcccccatg
cctggaccgattccagcacatccacctgggccaccaattggtgctcttcaaccaccactt
gcattctcgcctcatctaagtatgccacctccagggtttgcacctggtgtacctcctcca
cccccaccaccattcatgagacctggatttaacccacttcatttaccaccaggctttcta
cctcctggtcctcctcctcctttagtaccaccagtatctcttcctcctactccaggaata
aacatcctgacttctacttcaactaatgtgactgacaatacttcaaaagacatgtctttg
gggagtcccattccaacagtagtaactggacccagagggaatgctgaatctggagacagt
atgaaaatatttggatctggacctccacccatgggtcctggtggtcatcctggacctgct
aatcatcctggacctggtggtcatcctggacccgctaatcatcctggacctggtggtcat
cctgggcccgctaatcatcctggacctggcagtcatcctgggcttgctaatcatcctgga
cctggcagtcatcctgggcttgctaatcatcctgggcccgttaatcatcctggacctggt
ggtcatcctgggcccgctggtcaccctggacatagtggtcatcctggacccggcagtcat
cctgggcaaggtggtcaccctggccccagcggtcatcttggtcaaggtggtcaccctggc
cccggcggtcatcctgggcaaggtggtcaccctggacccggcagtcatcctgggcaaggt
ggtcaccctggacccggcggtcatcctgggcaaggtggtcaccctggacccggcggtcat
cctgggcaaagtggtcaccctggacctggcggtcatcctcgctccggcggtcatcctggt
tctggcggtcactctgggcccgctagtcattctggccctggcagtcactctgggcccact
agtcattctggccctggcggtcactctgggcctgctagtcattctggccctggcggtcac
tctgggcctgctagtcattctggccctggcggtcactctgggcccgctagtcattctggc
cctggcggtcactctgggcccgctggtcatcctggtcctggtggtcatcctgggccttct
aatcgtcctggtggtcatcccagtcctggcggtcatcctgggcccattaatcatcctggt
cctggcggtcatactgggcccagcagtcatcctgctcctgtaaatgcacctgttccactt
ctcggtatacatcctcaagcaggtggtgcacctaattctgtacctgggttgcagccacca
tcaactggtcttctgggtgcacggcctggattaataccactccaacgacctccaggagtt
ccaccacctcatctgcaaagatttcccttaatgcctcctaggtctatgcctccccatatg
ggtcacagaggtccacctccaggaccaggaggctatggaatgcctccacctcatgggata
agaggccagtttccaccacatggtcattttgttagaccaggtggatcaggaggacatgga
ggctcaggtgggcctgaagagagagaaggaaggcagtttaggaatgagaggcaaatgttt
aatcctggtagagaccacgaaagatttggaagaaggtcttttggaaatcggattgaaaat
gatcgtgaccgctttagtaatcgacatgatgagagagatcatgattggcctggtgggaga
gatcacgattggcctggtgggagagatcacgattggcctggtgggagagatcacgattgg
cctggtgggagagatcacgattggcctgatgggagagatcacgattggcctggtgggaga
gatcacgattggcctggtgggagagatcacgattggcctggtgggagagatcacgattgg
cctggtgggagagatcatgattggcctggtgggtgcgagaggagggagtggggaagaaga
accccagaaagggacagacactgggacactgaggagagaaatagacggtttagtggctat
cgagatagaaatcaagagcctagagatagagagacacagagagaaaaagaagaaaatcga
gaaaaagaaaagcctgaggtaacagatggggaaaatagtgagaaaaaccatgaatctcct
agaggtagagtggggaatacagacattgtttcagaacttaataaaagggagtctgaatca
aaggctcccaaacctgctgaagaatcaccatctgtggctacctcagctgccaagcatcca
gagaaggattccggttcatttgtggaggctcctcgctaa
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