Geotrypetes seraphini (Gaboon caecilian): 117363084
Help
Entry
117363084 CDS
T09159
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117363084 (HTT)
04131 Membrane trafficking [BR:
gsh04131
]
117363084 (HTT)
03029 Mitochondrial biogenesis [BR:
gsh03029
]
117363084 (HTT)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117363084 (HTT)
Membrane trafficking [BR:
gsh04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
117363084 (HTT)
Mitochondrial biogenesis [BR:
gsh03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
117363084 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_ECM29
HEAT_GCN1
HEAT_2
HEAT_MROH2B_C
HEAT_EF3_N
DNA_pack_N
Motif
Other DBs
NCBI-GeneID:
117363084
NCBI-ProteinID:
XP_033806245
UniProt:
A0A6P8RLK1
LinkDB
All DBs
Position
1:complement(262278608..263110519)
Genome browser
AA seq
3161 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPVAAAAAAAAAAVVVVPEEPVQKQKRELSTTKKDRVNH
CLTICENIIAQSLRNSPEFQKLLGIAMELFLLCSDDAESDVRMVADECLNKVIKTLMDSN
LPRLQLELYKEIKKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRICKRHEE
SVQETLAAAIPKIMAAFGNFANDNEIKVLLKAFVTNLKSSSPTIRRTAAGSAVSICQHSR
RTQYFYTWLFNALLGLLVPVEDEHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTQ
KETEISPSRKQLIQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPDLLQALTTSGSIT
EVSVSRDESTGRSRSDSIVELIARGESSCSPVLSRKHKGKVLLGEEEGLEDDPESRSDNS
SFAASMKSELGSELTSSGISTAGSGSASDSTGHDIITEQPRSQHTLQSDSVDLNSSDLIS
TITEGEEDDTLSPTSSQISTVQSDNAIDLNDGTIQASSPISDSSQTTTEGPDSAVTPSDS
SEIVLDGTENQYSGMQIGQLQEEEDDTTNIPQEMLDPFRNSSLALSQTHLMRHMGHSRQS
SDSSVDRFITKEETVEPGELENKPCRIKGDIGHYTDGSAAPVVHCVRLLCASFLLTEEKS
VLVPDKEVRVSVKALAVSCVGAAVGLYPEAFFSRLYRTPTETTEQHENQYVSDVLNYINH
GDPQIRGATAILCGTIIYSILNMSRFDAENWLVRIRSSTGNAFSLVDCVPLLQKTLKDES
SVTCKLSCVAIRHCLMSLCNSTYSELGLQLIVDLLTLRNSSYWLVRTELLETLAEIDFRL
VRFLEDRAENLHRGVHYYTGLLKLQDRVLSNVIIQLLGDEDPRVRHVAASSLVRLVPKFF
YNGDQGQADPVVAVAKDQSNVYLKLLMHETQPPSHFAVSTITRNYRGYNVLQCSTDISVE
NNLSKIITAVSHALTTSTTRALTFGCCEALCLLSTSFPICTWSVGWHCGYVTTSSMQASR
IHVYKHRGRSFSVSQPSPTDEYRKTCTVGMANMVLSLLSSAWFPLDLSAHQDALLLAGNL
LAATAPKSLKNPFMAEEDISQGVNKQEEPWPALGDRILVTMVEQLFSHLLKVINICAHVI
DDVAPGPAIKATLSSLTNPPSLSPIRRRGREREPVEQTAVPLSPKKANETTPVSRQSDTA
GLPPSSKSSSLGSFYHLPSYLKLYDVLKATHANYKVTLDLQNNSEKFGGFLRTALDVLSQ
LLELASLQDIGKCVEEILGYLKSCFNREPIMATVCVQQLLKTLFGTNLSSQFDGSSSNPS
KSQGKAQRLGSSNLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEQDTSGWFDVLQK
VSSQLKSSLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDLLAQLV
QLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNVFFFLVLLSYERYHSKQIIG
IPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLL
RLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLARQQMQIDSHEALGVLNT
LFEILAPSSLRPVDMLLRSMFVTPNAMTSVTTVQLWISGILAILRVLISQSTEDIVLSRI
QELSFSPYLISCQNIKRLRDGEETCISMSEDQNEMNQSKYLPEETFSRFLLQLVGILLED
IGTKQLRVEMNEQQHTFYCQQLGTLLMCLIHIFKSGTFRRITVAATRLFKEDGSDDGFYT
LASLSMLVQSMVPTHPSLVLLWCQFLLLVNYTNYSWWSEVHQTLNRHNLSSTKLLGPQIS
KDGDEPESEAKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWVIVNHVQDLITLSHEP
PVQDFISAIHRNSAASGLFIQAIQSRCENLTTPTTLKKTLQCLEGIHLSQSGAVLMLYVD
KLLCTPFRVLARMVDTLACRRVEMLLAATLQNSIAQQNSIAQLPIEELDRIQEHLQSSRL
AQRHQRLYSLLDRFRRTVAPETVSPPPLITLHPLDGEKQPTIETLIPDKDWYVSLVRSQC
YTRSDSALLEGAELLNKIPQLELYSFMINKDFNLSLLAPCISLGVSRISGDQNSVLFETS
LRVTLDHVTHIVQQLPACHQVFQPLQPFENTPYWNKLSNIYGDAMFYQPVIILSRALAHY
IMSLSKLPVSLQIQPDKETDILLFVVLSLEALSWHLMHEQIPLSVDLQTVLDSCCLMLQQ
PILWNLLSSTAYVTHTCSLINCVRFIIEAVAVEPGDQLLCPERRKISTSKGSNEDEFDSN
VPKPKYITAACEIVAEMVDSLQTVLSFGHKRNNSIAAFLTPILRNIIVSLARLPLVNSYT
RVPPLAWKLGWSPKPGGEFATAVPEIPVEFLQEKEIFKEFIYRINTMGWTSRTQFEETWA
TLLGVLVTQPIVLDQEETQQEKIRGTSLCHPHSFYCIRCHWNEIGKMYQEDSERTQINVL
AVQAITSLVLSAMTIPVAGNPAVSCLEQQPRNKTLKALDTRFGRKLSVVRGIVEQEIQAM
VSKRDNIATHHLYQAWDPVPSLSAATTGALISHEKLLLQINTEREIGNMGYKLGQVSIHS
VWLGNNITPLREEEWDEDEEDEGDTPAPSSPPTSPINSRKHRAGVDIHSCSQFLLELYSQ
WILPSNPSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELQKLHPSEDEILNQY
LTPAICKAAAVLGMEKTVAEAVSRLLETTLRSTHMPSRIGALHGILYVLECDLLDETAKQ
LIPVISDYLLSNLRGIAHCVNVHNLQHVLVMCAAAFYLIENYPLDVGPEFTAGIIQMCGV
MVSGSEESTPSIIYHCVLRGLERLLLSEQLSRLDGEALVKLSVDRVNMQSPHRAMAALGL
MLTCMYTGKEKISPGRTSDVNATVPDSESVIVAMERVSVLFDRIRKGFPSEARVVARILP
QFLDDFFPPQDIMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHTTGQSSMVRDWVMLSLS
NFTQRTPVAMAMWSLSCFFVSASTSPWISAILPHIISRMGKSEQVDINLFCLVAIDFYRH
QIDEELDRRAFQSVFEVVASPESPYHQLLTCLQNVHKSTAF
NT seq
9486 nt
NT seq
+upstream
nt +downstream
nt
atggccacgatggagaagctgatgaaggcctttgagtcgcttaagtctttccagcaacaa
cagggaccggtggcggcggcggctgctgctgcagcggctgcggtggttgtggtgcccgaa
gagccggtgcaaaagcaaaagagggagctttcaactactaagaaggatcgggtgaaccac
tgcctaacaatatgtgaaaacataattgctcagtctctaagaaattctccagaattccag
aaactcctgggtattgctatggagcttttccttctctgcagcgatgatgcagaatctgat
gtcaggatggttgcagatgaatgccttaataaagtgataaagactttgatggattctaac
cttccgagactacaactggagctttacaaagaaattaaaaagaatggtgcttctcgaagc
cttcgagctgctctttggaggtttgctgagcttgctcatcttgttcgtcctcaaaaatgc
aggccgtaccttgtgaatttgctaccttgcctgacccgaatatgcaaacgacatgaagaa
tcggtacaagagaccttggctgctgctataccaaaaataatggctgcttttggcaatttt
gcaaatgacaatgaaatcaaggttttactgaaggcttttgtaacaaatcttaaatccagt
tcccctaccatccgtcgaacagcagcaggttctgctgtaagcatctgccaacactccaga
agaacacagtatttttatacttggctattcaatgcacttttaggtctgctagtgcctgtg
gaagatgagcaccctactctactcattttaggagtactgctgacgctaaggtatctcata
ccattgctgcagcaacaggtgaaagataccagcttgaagggcagctttggtgtgacgcaa
aaagaaactgaaatttcaccatcccgaaaacagcttatacaggtgtatgaattgaccttg
cattatactcagcatcaggaccacaatgtggtgactggagcattggagttactacagcag
ctttttagaacaccgccacctgacctccttcaagccctaaccacatctggcagcattaca
gaggtcagtgtatccagagatgaatcaactggcagaagtcgtagtgacagtatagttgaa
cttatagctagaggggagtcttcatgcagccctgttctttcaagaaagcataaaggtaaa
gtgcttttaggagaagaagaaggcttagaggatgaccctgaatcaagatcagacaactca
agttttgcagcttccatgaagagtgaactaggcagtgaattgacatcatctggtatatct
actgctggatctggctcagcgtctgactctacagggcatgacatcattacagagcaacca
cgttcacagcacacattacagtctgactcagtggatctaaatagttctgatttgatcagc
acaattactgaaggggaagaagatgacacgcttagcccaacttccagccaaatcagcact
gttcagtctgataatgctatagacttgaatgatgggactatccaggcttcctcacccatt
agtgatagttcgcagacaactacagaaggtccagactctgctgtgaccccttcggacagt
tctgaaattgtattagatggcactgaaaaccagtattctgggatgcaaattggacagctg
caagaagaggaagatgacacgacaaacattcctcaagaaatgttagatcctttcagaaat
tcatcacttgcactaagccaaactcatttaatgagacatatgggacatagtagacagtcc
tcagatagcagtgtggatcgctttataaccaaggaagaaactgtggagcctggagagctt
gagaacaagccttgcagaataaagggagacattggtcattacacagatggaagtgcagct
ccagtagttcattgtgttcgtctcttatgtgcttcattcctgctcactgaggaaaaaagt
gtgttggttcctgacaaggaggtgcgggtgagtgtgaaagcgttagccgtaagctgtgtt
ggagcagctgttggcctatatcctgaagcttttttcagcaggctttatagaactcccact
gaaactacagaacaacatgaaaaccaatatgtgtcagatgttctgaattatattaaccat
ggtgatccgcagataagaggagctactgccattctctgtggtactattatctactccatt
ctcaatatgtctcgatttgatgctgaaaactggttagtgagaatcagaagttcaacagga
aatgccttttccttggtagactgtgtacctttgcttcagaaaaccttgaaagatgaatcc
tcggttacttgcaagttatcctgtgtagctattaggcattgccttatgagtttatgtaat
agcacctatagtgaattaggtttacaactgattgttgacctactgactttgaggaatagc
tcttactggctggtacgaactgagcttttggaaactctagctgaaatagattttaggttg
gtcagatttttggaagacagagctgaaaacttgcacagaggggtccactattatacaggg
ttattaaaacttcaagatagagtactcagcaatgttatcatccagctacttggagatgaa
gaccccagagtacgacatgtagcagcctcttcattagtaagacttgtcccaaagtttttt
tataatggtgaccaaggacaagctgatccagtagtggccgtggcaaaagaccaaagcaat
gtctacttgaaactcctcatgcatgagactcaacctccatctcactttgcagtcagcact
atcaccagaaattatagaggttataatgtgctacaatgttcaactgacattagtgtggaa
aataatctctcaaaaattatcactgcagtttctcatgcattgacaacatctactacacgg
gctttgacatttggctgctgtgaagctctgtgtcttctctcaacttcatttccaatatgt
acatggagtgttggatggcattgtggttacgttactacctccagtatgcaagcttctaga
attcatgtttacaaacatagaggacgctcattcagtgtttcccagccaagtcctacagat
gagtaccggaagacttgtactgttggaatggccaatatggtgttgtccctcctgtcatct
gcttggtttccattggatctgtctgcacatcaggatgccttgctcttggctggaaatctg
cttgcagctactgctccaaagtctcttaaaaacccttttatggctgaagaagatataagt
caaggagttaataaacaggaagaaccatggccagcactgggtgacaggattcttgttacc
atggtagagcaacttttttctcatttactgaaggtcatcaatatctgtgctcatgtgatt
gatgatgtagctcctggtcctgcaattaaggcaacattatcttccctgactaatccacct
tctttaagcccaatccgacgcagaggcagagaaagagaaccagtggaacaaacagctgta
ccattaagtcctaagaaggccaatgaaactactccagtttctaggcaaagtgatacagcg
gggcttcctccaagcagcaaatcttcatctcttggtagtttttaccatcttccatcctac
ctcaagttatatgatgttttgaaagctactcatgctaactacaaggttactttggatctc
caaaacaatagtgaaaagtttgggggatttctacgcactgcactagatgtcctttctcag
cttttagaacttgcatctcttcaagatattggaaaatgtgttgaagagatattaggatat
ctgaaatcctgtttcaaccgtgaaccaataatggctactgtttgtgtacaacagttgctg
aagacgctctttgggacaaacttgtcatcgcaatttgatggatcatcttcaaatcccagt
aaatctcaaggcaaagcccagcgtttaggctcttccaatctgaggcctggtctttaccat
tactgtttcatggcaccctacacgcactttacacaagctctagctgatgccagtttacgg
aacatggtgcaagcagagcaggaacaggacacttctgggtggtttgatgtgctgcagaag
gtttcttcacaactgaaatctagccttacaagtgttacaaagaatcgtgcagacaagaat
gccattcataatcacatccgcctgtttgaaccccttgttataaaagccttaaagcagtat
accaccactacatctgtacagctacaaagacaagttttagacttgcttgcacagctggtt
cagttgcgagttaattactgtctcctggattctgatcaggtgttcattggatttgtacta
aagcagtttgaatacattgaagtgggacagttcagagaatccgaggcaattattcctaat
gtttttttcttcttggtgttactgtcttatgagcgttaccactctaagcagattattgga
attcctaaaataatccagctctgtgacggcatcatggcaagtggaaggaaagcggttaca
catgctataccagctctgcagcctatagttcatgatctttttgtattaagaggtacaaac
aaagctgatgctggcaaagaacttgaaacacagaaggaagtggttgtgtccatgctgctc
aggcttatccagtaccatcaggtgctggaaatgttcatcttggtactgcagcagtgtcac
aaagagaatgaagataaatggaaacggctgtccagacaaatagcagatataattcttccc
atgctagcaagacagcagatgcagatagattctcatgaagctctgggggtgttaaatact
ttatttgaaatattagctccatcatctctccggcctgtagacatgcttctgaggagtatg
tttgtgacacccaatgcaatgacttcagtgaccacagttcagctttggatttctggtatt
ctagccatcctcagggttcttatttcccagtcaactgaggacatagttctgtctcgtatt
caagagctctccttctctccatacttgatttcatgccagaatattaaaagattgcgggat
ggagaggagacatgcatatccatgtcagaagatcagaatgagatgaatcagagtaaatat
ctgcctgaggaaaccttctcaaggttcttgttacagctagtgggtatcctgctagaagac
attggtactaaacagctcagagtggaaatgaatgaacaacagcatacattctattgccag
cagctgggtacactacttatgtgtctaatccatatcttcaaatcaggaacatttagaaga
atcacagttgctgctactaggctttttaaagaagatggttctgatgatggattttatact
ttagcaagtctgagcatgctagttcagtctatggtgccgacacatccatctctagtgctc
ctctggtgccaattcttgcttcttgtcaactataccaactacagctggtggtctgaggtg
catcagactttgaaccggcacaatctttccagtactaaactccttggtcctcaaatctcc
aaagatggtgatgagcctgaatcagaagctaaacttggcatgtgcaatcgagaaatagtg
cgaagaggggcactaatccttttttgtgattatgtttgccagaacctgcatgattcggag
catttaacctgggttatagtaaaccatgttcaggatctgatcactctatcccatgaacct
ccagtgcaagattttattagtgcaattcacaggaattctgctgctagtggccttttcatc
caagctatccagtctcgatgtgaaaaccttaccactccaacaactctaaagaagactcta
cagtgcttagaaggaatccatctgagccagtccggggctgtgttaatgctgtatgtggac
aagttactgtgtactccattccgtgtgctggctcgcatggttgacactcttgcttgtcga
cgggtagaaatgcttttagctgcaactttacagaatagcatagctcagcagaatagcata
gctcaattaccaatagaagaattggacagaatacaggaacaccttcagagcagcagactg
gcacaaagacaccagagactgtactccctgctagacagatttcgtcgtactgttgctcct
gaaactgttagtcctccacctctgattactttgcacccacttgatggggagaagcagcct
actatagagacactaattccagacaaagactggtatgtgtctttggtgagatctcagtgc
tatacccggtcagactctgcactgctggaaggtgctgagctgctgaataagattcctcag
cttgaactatactcattcatgatcaataaggatttcaacttgagtttattggcaccctgc
ataagcctgggtgtgagcaggatatcaggagaccaaaacagcgtactttttgaaacttca
cttagagtgactctggatcatgtaacccacattgtacagcagcttcctgcctgccatcag
gtcttccagccattgcagccttttgagaacacaccttactggaacaaactaagcaacata
tatggtgatgcaatgttctatcagcctgtgatcatactgtcccgtgcactggctcactat
atcatgtcactttcgaaactaccagtctcactccagattcaacctgataaagagactgac
attctgctttttgtagtgctatcactagaggcattgtcatggcacttaatgcatgagcag
attccattgagtgtagatctacagaccgttcttgacagctgctgtctgatgttgcagcag
cctattctttggaatttgctgtcttccactgcatatgtgacacacacttgttctttgatc
aattgtgtcagatttattattgaagcagttgcagtggaacctggagatcaacttctttgt
ccagagagaagaaagattagtacatcaaaaggaagcaatgaggatgaatttgattcaaat
gtaccaaaaccaaagtacatcacagcagcttgtgaaatagtggctgagatggtggatagt
ttacagactgttttatcttttgggcacaagagaaacaacagtattgcagcattcctcact
cctatccttaggaatattattgtaagcctggctagattaccacttgttaatagctacaca
agagtgcctccattggcctggaaacttggttggtcacctaaacctggaggtgaatttgcc
acagctgtccctgaaatccctgttgaattccttcaagaaaaagagatatttaaagaattt
atctatcgcataaacacaatgggatggacaagtcgtactcagtttgaagagacttgggcc
acccttcttggtgttcttgtgacccaacctattgtactagaccaagaggaaacccagcaa
gagaaaatcaggggaaccagcctttgccatcctcactccttttactgtatcagatgtcat
tggaatgaaattggaaaaatgtatcaggaagattcggagaggacccaaatcaatgttcta
gcagtacaagccataacctctttggtgctgagtgcaatgactattcctgttgcaggcaat
ccagcagttagttgcctggaacaacagccccgcaataaaacactgaaagcactagataca
aggtttggaaggaagctgagtgttgtcagaggaattgtagaacaagaaattcaagcaatg
gtctcaaaaagagataatattgcgactcaccacttatatcaagcttgggatcctgttcct
tctctatctgcagctaccacaggtgctctcattagtcacgaaaaacttctcttgcagata
aatactgagcgagaaattgggaacatgggctataaactgggacaggtctctatccactca
gtatggttgggaaataacatcactccattaagagaggaagagtgggatgaagatgaagaa
gatgagggtgatacacctgctccttcctcgcctccaacttccccaattaattccaggaaa
catagggctggagttgacatacattcttgctctcagttcttgctcgagctgtacagccaa
tggattcttccttcaaatcctagcaaaaggactccagtcatcttgatcagtgaagtagtg
cgatcacttctggcagtgtctgatttattcacagagagaaatcagtttgagatgatgtat
actaccctgacagaattacagaagctacatccatctgaggatgaaattctcaaccaatat
ctaactccagctatctgcaaagcagctgctgtgcttggaatggagaaaactgtagcagaa
gcagtaagtcgcttattggagacaactttgcgcagtacccatatgcccagccggattgga
gctctgcatggaatcctctatgtcttagaatgtgatctgcttgatgaaacagcaaaacag
ctcattccagtcatcagtgattatttgctgtccaaccttagaggcatagcacactgtgtg
aatgtgcataacctacagcatgtcttagtaatgtgtgctgcagcgttctacttgatagaa
aattaccccctcgatgtaggcccagaatttactgctggaattatacagatgtgcggtgtg
atggtctctggaagtgaggaatccacaccctcaatcatttaccattgtgtcctgagaggc
ttagaacgtctcctcctttcagaacagctttctaggctggatggggaagcattagttaag
ctgagtgttgacagagtcaatatgcaaagtccccacagagctatggcagcacttggctta
atgctgacatgcatgtacacaggaaaggaaaagatcagcccaggtcgaacttcagatgtg
aatgccacagttccagacagtgagtctgttattgttgctatggaacgtgtatctgttctt
tttgacaggatcaggaaagggtttccctctgaagctcgagtggtggcacggatcctccct
cagtttttggatgattttttcccacctcaagatattatgaacaaagttattggagaattc
ttatctaatcagcaaccttatccacagtttatggcaacagtagtttataaggtatttcaa
accctacatactactggacagtcatccatggttcgtgactgggtgatgctgtctctctca
aacttcactcagagaacaccagttgccatggcaatgtggagcctctcttgcttctttgtt
agtgcttccaccagtccatggatttcagcaattcttccgcacattatcagccgtatgggc
aaatcggagcaagtggacattaaccttttctgcctggtggccattgatttttacagacat
cagatagatgaggaactggatcggagggcctttcagtctgtgtttgaggttgtggcttcc
ccagaaagtccatatcaccaattattaacttgtttgcaaaatgttcacaagagtacagca
ttctga
DBGET
integrated database retrieval system
