Geotrypetes seraphini (Gaboon caecilian): 117363443
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Entry
117363443 CDS
T09159
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04137
Mitophagy - animal
gsh04140
Autophagy - animal
gsh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117363443 (HIF1A)
04137 Mitophagy - animal
117363443 (HIF1A)
04148 Efferocytosis
117363443 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117363443 (HIF1A)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117363443 (HIF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
117363443
NCBI-ProteinID:
XP_033807066
UniProt:
A0A6P8RPP2
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All DBs
Position
7:147723363..147856644
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AA seq
808 aa
AA seq
DB search
MEGQVANDKKRISLERRKEKSRDAARYRRGKESEVFYELSHQLPLPHNVTSHLDKASIMR
LSISYLRLKKLLDAGELATENDLDKQLNSFYLKALEGFVLVLTEDGDMIYLSENVNKCMG
LTQFELTGHSVFDFTHPCDQEELREMLTHRNGSVKKGKEPNTERNFFLRMKCTLTSRGRT
VNIKSATWKVLHCTGHIRVYDTCDNQSSCGYKTPPMTCLVLICEPIPHPSNIEVPLDKKT
FLSRHSLDMKFSYCDERITELMGYEPEELLGHSIYEYYHALDSDHLTKTHQDMFTKGQVT
TGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSEIVQKDLVFSLGQTECML
KPVESTDEKTPTLMSKSEAEEDSSTLFDKLKEEPDGLTLLAPAPGDAFIMLDFNTNESDM
QQFDDDDSSYSDVLYSSVAKDQSMAMSPLPAAETSKPLRSNADPALNREVVIKLEPNPEA
LDLTFTIPQLQKQQGSSSDSSSSRSSSEPSTPSSYCFDVDNDISNEFKLELVEKLFAIDT
EAKDPFSAQETDLDLEMLAPYIPMDDDFQLRSFDQLSSLESESTNPQNMDAINIFESSRL
ASTTTDKFKAVTTENMGDIKPLMTSLDFQVQNEGKSAPASPYSGRQSRTASPVRAGKERL
EETECSRPGTPNLPISLSKRIPAVTEEINPKMLALHNVQRKRKMEHDCSLFQAVGIGSLF
QVTNTAGSEEVVSWKRAKGGESSSQNGAEQRIVILLSTDMASKLLGQSLDSSGLPELTNY
DCEVNAPVQGSKKLLQGEDLLRALDQVN
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggaagggcaagttgccaacgacaagaaaaggattagcttagagcgccgaaaggaaaaa
tcaagagatgcagctagatatcgaagaggcaaggagtctgaagttttctatgaactttct
caccagctgcctctacctcataatgtgacatcacaccttgataaagcttccattatgaga
ctatctatcagttatctacgcttaaagaagctactagatgctggtgaactggcgactgaa
aatgatcttgataaacaactgaacagcttctatctaaaagccttggaagggtttgtcttg
gtactgactgaagatggagacatgatctacctgtctgaaaatgtcaataagtgcatgggg
cttacacagtttgaattgactgggcacagtgtatttgactttacccatccatgtgatcag
gaagagttaagagaaatgcttacacacaggaatggatctgtgaagaaaggaaaagagcca
aacacagagaggaactttttcctcaggatgaagtgcacactgactagcagggggcggact
gtgaacattaagtcagcaacatggaaggttcttcattgtactgggcatatacgtgtatat
gacacttgtgataatcagtccagctgtggctataaaactcctccaatgacctgcttagtg
ctgatctgtgaacccatccctcatccatccaatattgaggtccctctggacaagaagact
tttctcagtcgacacagtctggatatgaaattttcatattgtgatgaaaggattacagaa
ctgatgggatatgagccagaggaacttttgggtcactcgatctatgaatattatcatgcc
ttagactctgatcatctgacaaaaactcatcaggatatgtttacaaaaggacaagttact
acagggcagtacagaatgctcgccaaacaaggtggctatgtgtgggtggaaactcaagca
actgtgatatataacacgaaaaattcacagccacaatgtatagtttgtgtaaattatgtc
ttgagtgagattgtccagaaggatttggttttctctcttggccagactgaatgtatgttg
aaaccagtcgaatctactgatgagaaaacaccaacactcatgagcaaatcagaagcagaa
gaggattctagcactttatttgacaaactcaaagaagaaccagatggtttaactttgcta
gctcctgctccaggagatgcttttataatgttggattttaatacaaatgaatctgatatg
cagcagtttgatgatgatgattcttcatacagtgatgtactctattcatccgttgcgaag
gatcagagcatggcaatgtctcctctacctgccgctgaaacttcaaaaccactgcgaagt
aatgcagaccctgcactaaacagggaggttgttatcaaactagagccaaatccagaggca
ctagatcttacctttaccattcctcaactgcaaaagcaacaaggcagttcttctgattca
agcagtagtcggagctcatcagagcccagtacacccagcagttactgctttgatgtggat
aatgatatttcaaatgaattcaagttggagttggtagagaaactttttgcaatagacaca
gaagcaaaagatccattctctgctcaggaaactgatttagacctggagatgttggcacct
tatatcccaatggatgatgacttccagttgcgctcatttgaccagctttcttctttggag
agtgaatctacgaaccctcaaaacatggatgctattaatatttttgaatcgtcccgacta
gcaagtaccaccactgacaaatttaaagcagtcacaacagaaaatatgggtgatattaag
ccactgatgacttcattagatttccaagtacagaatgaaggaaaaagtgctcctgcatca
ccatatagtggtagacaaagtcggacagcatctccagttagagcaggaaaagagagatta
gaagaaacggaatgctctcgtcctggcacaccgaacttaccaatctctctcagtaaaaga
attccagctgtgacggaggagataaacccaaagatgttagcattgcacaatgttcagaga
aaacgaaaaatggaacacgattgctccctcttccaagcagtgggaattggctccttattc
caagtgacaaacactgctggaagtgaagaagtggtttcctggaaacgtgcaaaaggtggt
gaatctagcagccagaatggagcagagcaaaggatagttatcttattatcaacagatatg
gcaagcaagttgctagggcaatcattggattcaagtggtttgccagaactgaccaattat
gactgtgaagtgaatgctcctgtacaaggcagtaaaaaacttctgcagggagaagatttg
cttcgagcgcttgatcaagttaactga
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