Geotrypetes seraphini (Gaboon caecilian): 117363537
Help
Entry
117363537 CDS
T09159
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04140
Autophagy - animal
gsh04148
Efferocytosis
gsh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117363537 (VPS39)
04148 Efferocytosis
117363537 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117363537 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117363537 (VPS39)
Membrane trafficking [BR:
gsh04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
117363537 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
117363537
NCBI-ProteinID:
XP_033807317
UniProt:
A0A6P8RP71
LinkDB
All DBs
Position
7:complement(117407189..117488382)
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFDPVPILEKLPLQIECMAAWEEWLLVGTRQGHLLLYQIKKVPGCNQFEVTLEKSNK
NFSKKIQQIHVVPQFKILVSLLDSNVHVHDLLTFQQITAISKAKGATLFTCDLQHSTTGE
EELRMCVAVKKKLQLFFWKDREFYELQGDLSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVTPLEDKKVAVGQDDLTVVLNEEGTCTQKCALNWTDIPMAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITCGGNNIVYVASNHFVWRLVPVSI
AIQIQQLLQDKQFELALQLAKMKDDSDTEKRQQIHHIQNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVIGLYPDLLPSEYKKQLQYPNPVPVLSGVELEKAHLALIDYLTQKRSHLVKQL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQRLGTENL
QLVFPYSMWVLRDYPEDGLKIFTEDLPEVESLPRDQVLNFLMENFRDLVIPYLEHIILMW
EETGPQFHNCLIKLYCERVQALMKKYLPSLSEGTPLAPAGQEGGELGTYRCKLLGFLEIS
VDYEPEHLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTKMAEEYCHKHYDRKR
EGNKDVYLSLLRMYLCPPDVHCLGPIKMKLVEPHANLQAALNVLELHHGKLDTTKAISLL
PANTQIGEIRIFLEKVLEENSQKKRFNQVLKNLLHAEFLRVQEERISHQQVKCVITEEKI
CKMCKKKIGNSAFARYPNAVVVHYYCAKDVCTADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgatccggtgccgatcctggagaagctgccgctgcagatcgagtgc
atggcggcttgggaagaatggcttcttgttggcaccagacaggggcatctgcttctgtac
cagattaagaaagtcccaggctgtaatcaatttgaagttacattggagaaatccaacaag
aatttctctaagaagattcagcagatccatgttgttcctcagtttaaaatccttgtcagt
ttgttagatagtaatgtccacgtccatgacctgctgacatttcagcaaattactgcaatc
tccaaagcaaaaggggcaactctgtttacatgcgacctgcagcactcaaccacaggtgag
gaggagctgaggatgtgtgtcgcagtgaagaagaagctgcagcttttcttctggaaggat
agggagttctatgaactgcagggggacctcagtgttccagatgtgccaaagtccatggca
tggtgtgagaactcaatctgtgtgggcttcaagagggattattatctgattagggtagat
ggaaaagggtcaatcaaagaactgttccccacagggaagcagctggagcccttggtgact
cctttagaagacaagaaagtcgcagttggccaggacgacctcactgtagtcctgaatgaa
gagggaacctgtacccagaaatgtgctctgaactggactgacatccccatggccatggaa
catcaacctccatacatcattgcggtactgccaagatatgttgagatccgaacgtttgag
ccgagactattggtacaaagcattgagctgcagaggcctcggttcattacatgtggaggc
aacaacattgtgtatgtggccagcaaccattttgtttggcggctagttccagtctctata
gcaatccaaattcagcaactccttcaagataaacagtttgaactggcccttcagctcgca
aaaatgaaggatgattcggacacagagaaacgccaacagattcaccacatccagaacctc
tacgctttcaaccttttctgccagaagcgctttgatgaatctatgcaggtctttgccaag
cttgggacagatcctacacatgtaattggtctctatcctgatctgttgccctctgagtac
aagaagcagcttcagtaccccaaccctgtgcctgtactttcaggagtggagctggaaaaa
gcacatcttgcacttatagactatctgacacagaagagaagtcacttggtgaagcagctg
aatgactctgaccaccaatcaagcacatctccgctcatggagggaacacccaccattaaa
tccaaaaagaagctactacagatcattgataccactttactcaagtgctacctgcatact
aacgtggctttagtggctccattgttgcgattggaaaacaatcactgccacattgaggag
agtgagcacgtactgaagaaggcacacaagtatagtgagctgatcatcctctatgagaaa
aagggtttgcatgaaaaagctctgcaggtgttggtggatcagtcaaagaaagctaattca
ccactgaaaggccatgagaggacagtgcagtatctacagcgtctgggaacagagaatcta
cagttggtgttcccttactccatgtgggttttgcgagactatccagaggatggactaaag
atatttactgaagatctccctgaggtggagtctctgcctcgagaccaagtattaaatttt
ttaatggagaacttcagagaccttgttattccttatctggaacatatcatcctcatgtgg
gaagagactggcccacagttccacaactgcttgatcaaactatattgtgagagagtacaa
gccttaatgaagaaatatctgccctccttatctgaaggtacaccgctagcccctgctgga
caggaaggaggagagctaggaacataccgctgcaaacttcttggtttcctggagatttca
gttgactatgagcctgagcaccttatcagtgacttcccttttgatggcctgctggaggaa
cgtgccctactgttgggccgaatggggaagcatgaacaagcccttttcatttatgttcac
attttgaaggacaccaaaatggctgaagagtattgccacaaacactatgacagaaaaaga
gaaggtaacaaagatgtttacctctccctgcttcgtatgtacctgtgtcctcctgatgtt
cactgcttgggcccaattaaaatgaaactggtggaacctcatgcaaatctgcaggcagca
ctgaatgttctagaactgcaccatgggaaacttgataccaccaaggcgataagtcttctt
ccagcgaacacacaaattggggagatccgaatcttcctggaaaaggtcttggaggaaaac
tcccaaaagaaacgatttaatcaggtgctgaagaaccttttacatgcagagttcttgagg
gtgcaggaagagcggatatcacaccagcaggtgaagtgtgtcatcacagaagagaagata
tgcaagatgtgcaagaagaagattggaaacagtgcctttgcccggtatcctaatgctgtg
gttgtacattattactgtgccaaggatgtgtgtacagcggacacttga
DBGET
integrated database retrieval system
