Geotrypetes seraphini (Gaboon caecilian): 117363822
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Entry
117363822 CDS
T09159
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03013
Nucleocytoplasmic transport
gsh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117363822 (PNN)
03015 mRNA surveillance pathway
117363822 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117363822 (PNN)
03041 Spliceosome [BR:
gsh03041
]
117363822 (PNN)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117363822 (PNN)
Spliceosome [BR:
gsh03041
]
Complex C
Other components
EJC/TREX
117363822 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
117363822
NCBI-ProteinID:
XP_033808110
UniProt:
A0A6P8RRE4
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All DBs
Position
7:123968568..124017526
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AA seq
689 aa
AA seq
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MAVAVRALQEQLEKAKESLKNVDENIRKLTGRDPNDIRPALARRLTISGLGGGRGRGGVL
LRRGLSDSGGGPPAKIRDFEGAANRLGGARRARRESRQESDAEDEDDVKKPALQSSVVAT
SKERTRRDLIQDQTMDEKGKQRNRRIFGLLMGTLQKFKQESTVSTEREKRRQEIEQKLEV
QAEEEKKQVENERRELFEERRAKQTELRLLEQKVELAQLQDEWNEYNVNLIKHIRTKTKP
HLFYKPGKMYPSTQKLLEDSQRKLNAIFENRRIEFAEQINRMEARPRRQSMKGKEQPEAQ
REEQKKEKKEEEVARQEGKVAQQEEELEETGNQHNDIEMEDAGEDEEEEKKVGIPHSDAD
REEEEEEEPKEETEVRMAEEEIEGGEDERHQESQQESMVVIEEDEGKNEESNEPKEMETN
QVDSVELAESENSKEAELETETIVESEVYTEKESIIEMERENANNLEMEVEFLEKQEEEK
ELEPEFCPRPRIFTQLRKEPGQEIDLEETMIVTVKVADAHIEPAQDLTVNFKSKTRSRSR
GRARHKTSKSKSHSSSSSSTSSTSSSSSSGSSSSSGSSSSQSSSSSSSSSSGSSSSGSSS
SSESRSRSRGHGHVRERKRRRSMDRKRRDASGIDKSHKSSKLSSRDAKGSKAKISRPDRK
RSISESSRSGKRSSRSERDRKSDRKDKRR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggtgagagcattgcaggaacagctcgaaaaggcgaaagaaagtctgaaa
aatgtagatgaaaacatacgaaagttgaccggcagggatccgaatgacattagacctgct
ttagctagacgtctgaccatctcaggccttggtggaggtagaggacgtggtggtgtactg
ttaaggcgtggactgtcagatagtggaggaggccccccagctaaaataagagattttgaa
ggggcagctaatcggctgggtggagcacgtcgggcaaggagagagtcacgccaggaaagt
gacgcggaagatgaagatgatgtcaagaagcccgcgttgcagtcctctgttgttgctacc
tccaaagaacgaacacgccgagatcttattcaagatcagacgatggatgagaagggaaaa
caaaggaatcggcgtatatttggcctgttgatgggaactcttcaaaaatttaaacaagag
tctacagtatctacagaaagggaaaaaagacggcaagaaattgaacagaaacttgaagtt
caagcagaagaagagaaaaaacaggttgaaaatgagagacgagagctgtttgaagagagg
cgtgcaaaacaaacagaattgcgactgttagaacagaaggttgaacttgcacagctgcaa
gatgaatggaatgagtataatgttaatctaattaaacacataaggaccaagacgaagcct
catctgttttataaacctggcaagatgtatccatctactcagaaattattagaggactca
cagagaaaattgaatgcaatttttgaaaacagacgtattgagtttgcagagcaaataaac
agaatggaggctaggcctagacgacaatctatgaaaggaaaagaacaaccagaggcacag
cgtgaagaacagaagaaagaaaagaaagaagaggaggttgcacggcaagagggtaaggtg
gctcagcaggaggaagagttggaggagacaggtaaccagcacaatgatatagagatggaa
gatgcaggagaggatgaggaagaggaaaagaaagtaggtatacctcatagtgatgcagac
agagaagaggaggaagaggaggagccaaaggaggaaactgaggttagaatggcagaagag
gaaatagagggaggggaagatgagaggcaccaggaaagtcaacaggaaagtatggtagtg
atagaggaagatgaagggaagaatgaggagagtaatgaaccaaaggaaatggagacaaat
caagttgatagtgtagaattagcagaaagtgagaatagcaaagaagcagaactcgagacg
gagacaatagtggagtctgaggtttatacagaaaaagaatccattattgaaatggaaaga
gagaatgccaacaatcttgagatggaggttgaattcttagaaaagcaagaggaagaaaaa
gagcttgagccagaattctgtcctcggcctcggatcttcactcagttaagaaaagagcca
ggacaggagatagacctagaagaaactatgatagtgactgtaaaggtggctgatgctcat
atcgagccagcccaagacttaactgtaaatttcaaaagcaaaaccaggagcagaagcagg
ggaagggctaggcacaaaaccagcaagagtaaaagtcatagcagcagcagcagtagtacc
agtagcacttcaagcagcagcagtagtggaagcagttctagcagtggaagcagtagtagc
cagagcagttctagcagcagcagtagtagcagtggaagcagtagcagcggcagtagtagc
agcagtgagagtagaagccggagcagggggcatggccatgtaagagagagaaagcggagg
cgaagcatggatcgaaagcggagggatgcatcaggaatagataaaagtcacaagtcttca
aaacttagcagcagagatgcaaaaggatccaaggctaaaatttcgaggcctgacagaaag
aggtctatatcagaaagcagtcgatcaggcaaaagatcctcacggagtgagagagaccgt
aaatcagacaggaaagacaaaaggcgttga
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