Geotrypetes seraphini (Gaboon caecilian): 117364036
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Entry
117364036 CDS
T09159
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04140
Autophagy - animal
gsh04148
Efferocytosis
gsh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117364036 (VPS18)
04148 Efferocytosis
117364036 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117364036 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117364036 (VPS18)
Membrane trafficking [BR:
gsh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117364036 (VPS18)
Hops complex
117364036 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-rbx1
zf-RING_2
zf-C3HC4
zf-ANAPC11
DUF4446
DUF2229
zf-RING_Vps41
zf-RING_UBOX
DUF2175
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
117364036
NCBI-ProteinID:
XP_033808677
UniProt:
A0A6P8RSX5
LinkDB
All DBs
Position
7:complement(119996134..120023901)
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AA seq
974 aa
AA seq
DB search
MASILEEYEDSLSRSASLPQSRSNIGIPLSGFVNARLEKETPIFNKQRIDFTPPENINSL
VVCSNQLCMSLGKETLLRIDLVKADQPNQVELGRKDEAKVHKLFLDPTGSHLLIALNTSE
CLYLNRNTQKIRTLSRWKGHIVESIGWNKFFGTETNTGPILVGTTQGQIYEAEISASEGG
LFSTNPDQYFRLVYTLDEEGGPAPVCCLEVERGIEGRYVIIATTRKRLFQFFGKMSEGTE
QQGFGLLFSAYTDRLPSFQEFPVNLGYSEIAFYTPKLRSFPRSFAWMMGNGVLYGTLDYS
RPDSLFSDIQVWEYPSDVDLHFNKPISIVLTQFHFLLLLVDRVKAICTLNGQVVFQDVFL
EKFGSLKRMVKDPIVGQIWIHTEKAVFRYHVQRESRDVWKMYMNMGKFDLAKEYCKDRPE
CLDMVLAKEAEHCFQNRRYMESAKCFALTQNYFEEIALKFIDAKQEEALMEFLLKKLVSL
KPSEKTQITLLITWLTELYLNRLGFLESDISKRNLYLEMREEFRKFLSSPKNKDCLFNNR
ASIHDLLASHGDTEHMVYFAVLMQDYERVISHHCQNDDYDEALNVLSRHRDEKLFYKFSP
ILMQHIPKKLVDAWITMGKRLDARNLIPALVNYSQIGGTEQINEAIRYMEFCVYELQEKE
QAIHNYLLSLYAQCRPDSLLPYLEQAGTNPARIHYDLKYALRLCAEHGHHRACVHVYKVM
ELYEEAVDLALQVDVDLAKSCADLPEEDEELQKKLWLKIARHVVQEEKDVKKAMVCLSSC
NLLKIEDILPFFPDFVTIDHFKEAICSSLEAYNKHIEELKKEMEEATQSAKRIREDMQEM
KNKYGLVEPHEKCVACNFPLLNHPFYLFLCGHEFHYDCLLEAVRPNLPSYKQVKLEDLQK
KLAATNQPPKSRHRLKDEDTISLGKGQQTHEQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEEKQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctatcttagaggaatacgaggactctctgtctcgctcggcctcgttgcctcag
agtcgctccaacattggcatccctttgtcgggatttgtgaatgctcggctagagaaagaa
acacctatttttaacaagcaaaggatagatttcacgcctcctgagaatattaacagcttg
gttgtctgcagtaaccagctttgtatgagcctgggcaaagagacacttcttaggattgat
ttggtgaaagcagatcagcccaatcaggtagagctgggacgcaaagatgaagccaaagtt
cataaattgttcttagatcccacagggtctcatcttctgattgctctgaatacaagtgaa
tgcctctatctgaatcgaaatactcaaaaaatacgcactctctcccgctggaagggccat
attgttgaaagcataggctggaataaattttttggtaccgagaccaatactggcccaata
ttggtggggacaacccaaggtcaaatctatgaagctgagatctcggccagtgaaggaggc
ctctttagtaccaatcctgatcagtactttcggctggtttacaccctcgatgaggaagga
gggccagctccagtctgctgtttggaggtagaacggggaattgaaggacggtacgtcatc
atcgccaccactcggaagagactctttcagttttttggcaaaatgtctgagggcacagag
cagcaaggttttggcttattattcagcgcatatacagatcgtttacctagtttccaggaa
ttcccagtaaaccttggctatagtgagattgctttctacacaccaaagcttcgttccttc
ccacgctcctttgcttggatgatgggtaatggggtcctttatggtacactggactatagt
cgtcctgactctctttttagtgatattcaggtctgggaatatccatctgatgttgactta
cattttaacaagcccatctccattgtgctaacccagttccacttcctcttgctactggtt
gacagagtaaaggctatctgcaccctgaatgggcaggtggtctttcaagatgtctttctg
gagaaatttggctctctgaaacgaatggttaaagaccctattgttggacagatctggatc
catactgaaaaggctgtgttccgctatcatgtacagcgtgagtccagagatgtatggaag
atgtacatgaacatgggcaaatttgatttggccaaagaatactgcaaggatcgtccagaa
tgtctggacatggttcttgctaaagaagcagaacactgtttccagaaccgaagatacatg
gagagtgccaagtgttttgcactgacccagaattactttgaggagatagccctgaagttc
attgatgctaaacaggaagaggcactgatggagttcttgttgaagaagctggtcagtctc
aaaccatcggaaaaaactcagatcactctgttaattacatggttaaccgaactctacctg
aaccgactgggctttttagagagtgatatatcaaaacgtaacctttatctggaaatgcgt
gaagagttccgtaaattcttgagtagtcccaagaacaaagattgccttttcaataaccgt
gcctccatccatgacttgttggcgagccatggtgatacagagcacatggtatactttgca
gtactcatgcaggactatgagagggtgatatcccaccattgccagaacgatgactatgat
gaagctcttaatgtcctttctaggcacagagatgagaaactgttttacaaattcagtcca
attctgatgcaacatatccccaagaaactggtagatgcttggatcaccatgggcaaaaga
ttggatgcaaggaacctcatacctgctctggttaattacagtcagattggtggcactgaa
cagattaatgaagctatcagatacatggagttctgtgtttatgagctacaggaaaaagaa
caagccattcataactatttactatctctctatgcacaatgtcgaccagattcactgctt
ccatacctagagcaagctggaaccaaccctgccaggattcattacgacctgaagtacgca
cttcgattgtgtgctgaacacggacatcaccgtgcctgtgtccatgtgtacaaagtcatg
gaattgtacgaggaggcagtggatctagctctacaggtggatgtggatctggccaagtct
tgtgctgatttacctgaggaggatgaggagctgcagaagaaactgtggttgaaaatcgcc
cgtcatgtggttcaggaagaaaaggatgtgaaaaaggccatggtctgcttatccagctgc
aatttactgaagattgaagacatcttgcctttctttccagactttgtcactatcgatcat
tttaaagaggccatctgcagctctctggaggcctacaacaaacacatagaggagctgaag
aaggaaatggaggaagctacacaaagtgccaagagaatccgggaggacatgcaggagatg
aaaaacaagtatggactggtggagcctcatgagaagtgtgtggcttgcaattttccgctc
ttgaaccaccccttctaccttttcctctgtggccatgaattccactatgactgtttgctg
gaagcagtccgtcccaacctgccttcctacaagcaggtcaaactggaggaccttcagaag
aagctggctgctacaaatcagccacccaaaagtcgccaccgcctcaaagatgaagatacc
atcagccttgggaagggacagcagacccatgaacagattaaggcagacattgatgacata
gtggcagcggaatgtgtgtactgtggggagctgatgatccgctccatagacaaacctttc
attgatccgcagaagtatgaggaggagaagcagagctggttgtag
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